scsR : SiRNA correction for seed mediated off-target effect

Package: scsR
Type: Package
Title: SiRNA correction for seed mediated off-target effect
Version: 1.8.0
Date: 2014-10-28
Author: Andrea Franceschini
Maintainer: Andrea Franceschini <andrea.franceschini@isb-sib.ch>, Roger Meier <roger.meier@lmsc.ethz.ch>, Christian von Mering <mering@imls.uzh.ch>
Description: Corrects genome-wide siRNA screens for seed mediated off-target effect. Suitable functions to identify the effective seeds/miRNAs and to visualize their effect are also provided in the package.
License: GPL-2
Depends: R (>= 2.14.0), STRINGdb, methods, BiocGenerics, Biostrings,
IRanges, plyr, tcltk
Imports: sqldf, hash, ggplot2, graphics, grDevices, RColorBrewer
Suggests: RUnit
biocViews: Preprocessing
NeedsCompilation: no
Packaged: 2016-05-04 05:20:40 UTC; biocbuild