SimBindProfiles

Package: SimBindProfiles
Title: Similar Binding Profiles
Version: 1.10.0
Date: 2013-09-17
Author: Bettina Fischer, Enrico Ferrero, Robert Stojnic, Steve Russell
Maintainer: Bettina Fischer <bef22@cam.ac.uk>
Description: SimBindProfiles identifies common and unique binding regions in genome tiling array data.
This package does not rely on peak calling, but directly compares binding profiles
processed on the same array platform. It implements a simple threshold approach,
thus allowing retrieval of commonly and differentially bound regions between
datasets as well as events of compensation and increased binding.
Depends: R (>= 2.10), methods, Ringo
Imports: limma, mclust, Biobase
biocViews: Microarray, Software
License: GPL-3
NeedsCompilation: no
Packaged: 2016-05-04 05:06:44 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'SimBindProfiles' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'SimBindProfiles'
    finding HTML links ... done
    SGR                                     html  
    SimBindProfiles-package                 html  
    compensationRegions                     html  
    eSetScatterPlot                         html  
    findBoundCutoff                         html  
    increasedBindingRegions                 html  
    pairwiseRegions                         html  
    plotBoundProbes                         html  
    probeAnnoFromESet                       html  
Rd warning: /tmp/RtmpWNuKH0/R.INSTALL72897c9c0e87/SimBindProfiles/man/probeAnnoFromESet.Rd:33: missing file link 'probeAnno-class'
    probeLengthPlot                         html  
    readSgrFiles                            html  
Rd warning: /tmp/RtmpWNuKH0/R.INSTALL72897c9c0e87/SimBindProfiles/man/readSgrFiles.Rd:29: missing file link 'ExpressionSet'
    threewayRegions                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (SimBindProfiles)
Making 'packages.html' ... done