R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
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Results 1 - 10 of 11 found.
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SimBindProfiles-package (Package: SimBindProfiles) :

SimBindProfiles, identifies common and unique binding regions in genome tiling array data. This package does not rely on peak calling, but directly compares binding profiles processed on the same array platform. It implements a simple threshold approach, thus allowing retrieving commonly and differentially bound regions between datasets as well as events of compensation and increased binding.

● Data Source: BioConductor
● Keywords: package
● Alias: SimBindProfiles, SimBindProfiles-package
● 0 images

compensationRegions (Package: SimBindProfiles) : Classify two Binding Profiles - Compensation

This function is used to classify three Binding Profiles into regions which are bound in data set one and two but not three.

● Data Source: BioConductor
● Keywords:
● Alias: compensationRegions
● 0 images

eSetScatterPlot (Package: SimBindProfiles) : Scatterplot of ExpressionSet object

Create a smooth scatterplot with correlation

● Data Source: BioConductor
● Keywords:
● Alias: eSetScatterPlot
● 1 images

findBoundCutoff (Package: SimBindProfiles) : Find the bound.cutoff

Define the bound.cutoff using either the normalNull or the twoGaussiansNull method.

● Data Source: BioConductor
● Keywords:
● Alias: findBoundCutoff
● 0 images

increasedBindingRegions (Package: SimBindProfiles) : Classify two Binding Profiles - Increased Binding

This function is used to classify two Binding Profiles into regions which are more bound in one data set than the other.

● Data Source: BioConductor
● Keywords:
● Alias: increasedBindingRegions
● 0 images

pairwiseRegions (Package: SimBindProfiles) : Classify two Binding Profiles

Classify two Binding Profiles into unique and common binding regions and write results to bed files.

● Data Source: BioConductor
● Keywords:
● Alias: pairwiseRegions
● 0 images

plotBoundProbes (Package: SimBindProfiles) : Plot coloured bound probes

Scatterplot of bound probes in colour based on the method.

● Data Source: BioConductor
● Keywords:
● Alias: plotBoundProbes
● 1 images

probeAnnoFromESet (Package: SimBindProfiles) : Build a probeAnno from ExpressionSet

Build a probeAnno from ExpressionSet.

● Data Source: BioConductor
● Keywords:
● Alias: probeAnnoFromESet
● 0 images

probeLengthPlot (Package: SimBindProfiles) : Plot the probe length frequency

Plot the probe length frequency.

● Data Source: BioConductor
● Keywords:
● Alias: probeLengthPlot
● 1 images

readSgrFiles (Package: SimBindProfiles) : Read sgr data

Function to read sgr files into a list object, quantile normalise signal.

● Data Source: BioConductor
● Keywords:
● Alias: readSgrFiles
● 0 images