Sushi

Package: Sushi
Type: Package
Title: Tools for visualizing genomics data
Description: Flexible, quantitative, and integrative genomic visualizations for publication-quality multi-panel figures
Version: 1.10.0
Date: 2015-05-06
Author: Douglas H Phanstiel <dphansti@stanford.edu>
Maintainer: Douglas H Phanstiel <dphansti@stanford.edu>
biocViews: DataRepresentation, Visualization, Genetics, Sequencing,
Infrastructure, HiC
License: GPL (>= 2)
Depends: R (>= 2.10), zoo, biomaRt
Imports: graphics, grDevices
NeedsCompilation: no
Packaged: 2016-05-04 05:25:52 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'Sushi' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'Sushi'
    finding HTML links ... done
    SushiColors                             html  
    Sushi_5C.bedpe                          html  
    Sushi_ChIAPET_pol2.bedpe                html  
    Sushi_ChIPExo_CTCF.bedgraph             html  
    Sushi_ChIPSeq_CTCF.bedgraph             html  
    Sushi_ChIPSeq_pol2.bed                  html  
    Sushi_ChIPSeq_pol2.bedgraph             html  
    Sushi_ChIPSeq_severalfactors.bed        html  
    Sushi_DNaseI.bedgraph                   html  
    Sushi_GWAS.bed                          html  
    Sushi_HiC.matrix                        html  
    Sushi_RNASeq_K562.bedgraph              html  
    Sushi_genes.bed                         html  
    Sushi_hg18_genome                       html  
    Sushi_transcripts.bed                   html  
    addlegend                               html  
    chromOffsets                            html  
    convertstrandinfo                       html  
    labelgenome                             html  
    labelplot                               html  
    maptocolors                             html  
    maptolwd                                html  
    opaque                                  html  
    plotBed                                 html  
    plotBedgraph                            html  
    plotBedpe                               html  
    plotGenes                               html  
    finding level-2 HTML links ... done

    plotHic                                 html  
    plotManhattan                           html  
    sortChrom                               html  
    zoombox                                 html  
    zoomsregion                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Sushi)
Making 'packages.html' ... done