TDCor

Package: TDCor
Type: Package
Title: Gene Network Inference from Time-Series Transcriptomic Data
Version: 0.1-2
Date: 2015-10-05
Author: Julien Lavenus
Maintainer: Mikael Lucas <mikael.lucas@ird.fr>
Imports: parallel
Depends: R (>= 3.1.2), deSolve
Description: The Time-Delay Correlation algorithm (TDCor) reconstructs the topology of a gene regulatory network (GRN) from time-series transcriptomic data. The algorithm is described in details in Lavenus et al., Plant Cell, 2015. It was initially developed to infer the topology of the GRN controlling lateral root formation in Arabidopsis thaliana. The time-series transcriptomic dataset which was used in this study is included in the package to illustrate how to use it.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2015-10-05 10:11:17.744 UTC; root
Repository: CRAN
Date/Publication: 2015-10-26 15:58:36

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'TDCor' ...
** package 'TDCor' successfully unpacked and MD5 sums checked
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'TDCor'
    finding HTML links ... done
    CalculateDPI                            html  
    CalculateTPI                            html  
    LR_dataset                              html  
    TDCOR                                   html  
    TDCor-package                           html  
    TF                                      html  
    UpdateDPI                               html  
    UpdateTPI                               html  
    clean.at                                html  
    draw.profile                            html  
    estimate.delay                          html  
    l_genes                                 html  
    l_names                                 html  
    l_prior                                 html  
    shortest.path                           html  
    times                                   html  
** building package indices
** testing if installed package can be loaded
* DONE (TDCor)
Making 'packages.html' ... done