Vector containing the prior associated with the genes included in the network reconstruction in Lavenus et al. 2015, Plant Cell.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: l_prior
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Contains the times (in hours) at which the samples were collected to generate the Lateral Root transcriptomic dataset (data(LR_dataset))
● Data Source:
CranContrib
● Keywords: datasets
● Alias: times
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TF is a dataframe with two columns. The first column contains the AGI gene code of 1834 genes encoding Arabidopsis transcription factors. The second column contains the associated gene names.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: TF
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Character vector containing the 'everyday names' of the genes used to reconstruct the network in Lavenus et al. 2015, Plant Cell.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: l_names
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LR_dataset is a matrix of dimension 15240 lines x 18 columns. It stores a time-series transcriptomic dataset following the changes occuring in a young Arabidopsis root during the formation of a lateral root. To generate this dataset, lateral root formation was locally induced by a gravistimulus at t=0 and the stimulated part of the roots was collected every 3 hours from 6 hours to 54 hours. The transcriptomes were analyzed using the ATH1 affymetrix chip. For time point 0, unstimulated young primary root was taken as a control. Importantly, the transcript accumulation levels stored in this dataset are non-log2 values.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: LR_dataset
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Character vector containing the AGI gene codes of the genes used to reconstruct the network in Lavenus et al. 2015, Plant Cell.
● Data Source:
CranContrib
● Keywords: datasets
● Alias: l_genes
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providing 
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