bigmemory

Package: bigmemory
Version: 4.5.19
Date: 2016-03-28
Title: Manage Massive Matrices with Shared Memory and Memory-Mapped
Files
Author: Michael J. Kane <kaneplusplus@gmail.com>, John W. Emerson
<jayemerson@gmail.com>, Peter Haverty <haverty.peter@gene.com>, and Charles
Determan Jr. <cdetermanjr@gmail.com>
Maintainer: Michael J. Kane <bigmemoryauthors@gmail.com>
Contact: Mike, Jay, and Charles <bigmemoryauthors@gmail.com>
Depends: R (>= 3.2.0), methods, utils, bigmemory.sri
Imports: Rcpp
Enhances: biganalytics, bigtabulate, synchronicity
LinkingTo: BH, Rcpp
Description: Create, store, access, and manipulate massive matrices.
Matrices are allocated to shared memory and may use memory-mapped
files. Packages 'biganalytics', 'bigtabulate', 'synchronicity', and
'bigalgebra' provide advanced functionality.
License: LGPL-3 | Apache License 2.0
URL: http://www.bigmemory.org
LazyLoad: yes
Biarch: yes
VignetteBuilder: knitr
Suggests: knitr, testthat
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-03-28 15:38:05 UTC; mike
Repository: CRAN
Date/Publication: 2016-03-28 18:59:53

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'bigmemory' ...
** package 'bigmemory' successfully unpacked and MD5 sums checked
  checking for Sun Studio compiler...no
  checking for OS...Linux
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../inst/include -DLINUX -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c BigMatrix.cpp -o BigMatrix.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../inst/include -DLINUX -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../inst/include -DLINUX -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c SharedCounter.cpp -o SharedCounter.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../inst/include -DLINUX -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c bigmemory.cpp -o bigmemory.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../inst/include -DLINUX -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c deepcopy.cpp -o deepcopy.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../inst/include -DLINUX -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c util.cpp -o util.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o bigmemory.so BigMatrix.o RcppExports.o SharedCounter.o bigmemory.o deepcopy.o util.o -lrt -lm -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/bigmemory/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'as.matrix' from package 'base' in package 'bigmemory'
Creating a generic function for 'ncol' from package 'base' in package 'bigmemory'
Creating a generic function for 'nrow' from package 'base' in package 'bigmemory'
Creating a generic function for 'typeof' from package 'base' in package 'bigmemory'
Creating a generic function for 'head' from package 'utils' in package 'bigmemory'
Creating a generic function for 'tail' from package 'utils' in package 'bigmemory'
Creating a generic function for 'print' from package 'base' in package 'bigmemory'
** help
*** installing help indices
  converting help for package 'bigmemory'
    finding HTML links ... done
    GetMatrixSize                           html  
    as.big.matrix-methods                   html  
    as.matrix-big.matrix-method             html  
    attach.big.matrix                       html  
    big.matrix-class                        html  
    big.matrix                              html  
    big.matrix.descriptor-class             html  
    bigmemory-package                       html  
    deepcopy                                html  
    dim-big.matrix-method                   html  
    dimnames-methods                        html  
    extract-methods                         html  
    flush-methods                           html  
    head-methods                            html  
    is.float-numeric-method                 html  
    is.float                                html  
    length-big.matrix-method                html  
    morder                                  html  
    mwhich-methods                          html  
    mwhich                                  html  
    ncol-methods                            html  
    print-big.matrix-method                 html  
    sub.big.matrix                          html  
    typeof-big.matrix-method                html  
    write.big.matrix                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (bigmemory)
Making 'packages.html' ... done