biobroom

Package: biobroom
Title: Turn Bioconductor objects into tidy data frames
Version: 1.4.2
Author: Andrew J. Bass, David G. Robinson, Steve Lianoglou, Emily Nelson, John D. Storey, with
contributions from Laurent Gatto
Maintainer: John D. Storey <jstorey@princeton.edu> and Andrew J. Bass
<ajbass@princeton.edu>
Description: This package contains methods for converting standard objects
constructed by bioinformatics packages, especially those in Bioconductor,
and converting them to tidy data. It thus serves as a complement to the broom
package, and follows the same the tidy, augment, glance division of tidying
methods. Tidying data makes it easy to recombine, reshape and visualize
bioinformatics analyses.
biocViews: MultipleComparison, DifferentialExpression, Regression,
GeneExpression, Proteomics, DataImport
Depends: R (>= 3.0.0), broom
License: LGPL
LazyData: true
Imports: dplyr, tidyr, Biobase
Suggests: limma, DESeq2, airway, ggplot2, plyr, GenomicRanges,
testthat, magrittr, edgeR, qvalue, knitr, data.table, MSnbase,
SummarizedExperiment
VignetteBuilder: knitr
URL: https://github.com/StoreyLab/biobroom
BugReports: https://github.com/StoreyLab/biobroom/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-05-16 05:49:07 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'biobroom' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'biobroom'
    finding HTML links ... done
    DESeq2_tidiers                          html  
    ExpressionSet_tidiers                   html  
Rd warning: /tmp/Rtmpkxph3J/R.INSTALLa6466d58357/biobroom/man/ExpressionSet_tidiers.Rd:17: missing file link 'assayDataElement'
    GRanges_tidiers                         html  
    MSnSet_tidiers                          html  
    SummarizedExperiment_tidiers            html  
    biobroom                                html  
    edgeR_tidiers                           html  
    edge_tidiers                            html  
    hammer                                  html  
    limma_tidiers                           html  
    list_tidiers                            html  
    qvalue_tidiers                          html  
    sva_tidiers                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (biobroom)
Making 'packages.html' ... done