biomod2

Package: biomod2
Type: Package
Title: Ensemble Platform for Species Distribution Modeling
Version: 3.3-7
Date: 2016-03-01
Author: Wilfried Thuiller [aut, cre],
Damien Georges [aut, cre],
Robin Engler [aut],
Frank Breiner [aut]
Maintainer: Damien Georges <damien.georges2@gmail.com>
Contact: Wilfried Thuiller <wilfried.thuiller@ujf-grenoble.fr>, Damien
Georges <damien.georges2@gmail.com>
BugReports: <https://r-forge.r-project.org/R/?group_id=302>
Description: Functions for species distribution modeling, calibration and
evaluation, ensemble of models.
Depends: R (>= 3.2.1), stats, utils, sp, raster, parallel, reshape,
ggplot2
Imports: abind, rasterVis, pROC, nnet, gbm, mda, randomForest, rpart,
MASS, methods, PresenceAbsence, dismo, maxent, earth
Suggests: ade4, foreign, Hmisc, mgcv, gam, testthat, ecospat, caret
License: GPL-2
RoxygenNote: 5.0.1
Repository: CRAN
Repository/R-Forge/Project: biomod
Repository/R-Forge/Revision: 716
Repository/R-Forge/DateTimeStamp: 2016-03-01 10:01:06
Date/Publication: 2016-03-01 18:40:06
NeedsCompilation: no
Packaged: 2016-03-01 10:05:19 UTC; rforge

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'biomod2' ...
** package 'biomod2' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'biomod2'
    finding HTML links ... done
    BIOMOD.EnsembleModeling.out-class       html  
    BIOMOD.EnsembleModeling.out-methods     html  
    BIOMOD.Model.Options-class              html  
    BIOMOD.formated.data-class              html  
    BIOMOD.models.out-RemoveProperly        html  
    BIOMOD.models.out-class                 html  
    BIOMOD.models.out-methods               html  
    BIOMOD.projection.out-class             html  
    BIOMOD.projection.out-methods           html  
    BIOMOD.stored.objects-class             html  
    BIOMOD.stored.objects-methods           html  
    BIOMOD_ConvertOldRun                    html  
    BIOMOD_EnsembleForecasting              html  
    BIOMOD_EnsembleModeling                 html  
    BIOMOD_FormatingData                    html  
Rd warning: /tmp/Rtmp0Uhaeo/R.INSTALL58225969d673/biomod2/man/BIOMOD_FormatingData.Rd:32: missing file link 'SpatialPointsDataFrame'
Rd warning: /tmp/Rtmp0Uhaeo/R.INSTALL58225969d673/biomod2/man/BIOMOD_FormatingData.Rd:34: missing file link 'SpatialPointsDataFrame'
Rd warning: /tmp/Rtmp0Uhaeo/R.INSTALL58225969d673/biomod2/man/BIOMOD_FormatingData.Rd:38: missing file link 'SpatialPointsDataFrame'
Rd warning: /tmp/Rtmp0Uhaeo/R.INSTALL58225969d673/biomod2/man/BIOMOD_FormatingData.Rd:40: missing file link 'SpatialPointsDataFrame'
Rd warning: /tmp/Rtmp0Uhaeo/R.INSTALL58225969d673/biomod2/man/BIOMOD_FormatingData.Rd:67: missing file link 'SpatialPointsDataFrame'
Rd warning: /tmp/Rtmp0Uhaeo/R.INSTALL58225969d673/biomod2/man/BIOMOD_FormatingData.Rd:79: missing file link 'SpatialPointsDataFrame'
Rd warning: /tmp/Rtmp0Uhaeo/R.INSTALL58225969d673/biomod2/man/BIOMOD_FormatingData.Rd:93: missing file link 'SpatialPointsDataFrame'
    BIOMOD_LoadModels                       html  
    BIOMOD_Modeling                         html  
    BIOMOD_ModelingOptions                  html  
    BIOMOD_Projection                       html  
    BIOMOD_RangeSize                        html  
    BIOMOD_cv                               html  
    BIOMOD_presenceonly                     html  
    BIOMOD_tuning                           html  
    BinaryTransformation-methods            html  
    CustomIndexMaker                        html  
    DF_to_ARRAY                             html  
    FilteringTransformation                 html  
    Find.Optim.Stat                         html  
    Print_Default_ModelingOptions           html  
    ProbDensFunc                            html  
    SampleMat2                              html  
    biomod2-package                         html  
    biomod2.inner-methods                   html  
    biomod2_model-class                     html  
    calculate.stat                          html  
    deprecated_functions                    html  
    evaluate                                html  
    full_shuffling                          html  
    getStatOptimValue                       html  
    level.plot                              html  
    makeFormula                             html  
    models_scores_graph                     html  
    multiple.plot                           html  
    randomise_data                          html  
    response.plot                           html  
    response.plot2                          html  
    sample.factor.levels                    html  
    sre                                     html  
    update_objects                          html  
    variables_importance                    html  
Rd warning: /tmp/Rtmp0Uhaeo/R.INSTALL58225969d673/biomod2/man/variables_importance.Rd:43: missing file link 'full_suffling'
** building package indices
** testing if installed package can be loaded

biomod2 first load...
custom help index setting up...
* DONE (biomod2)
Making 'packages.html' ... done