caret

Package: caret
Version: 6.0-70
Date: 2016-06-09
Title: Classification and Regression Training
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer, Allan Engelhardt, Tony Cooper, Zachary Mayer,
Brenton Kenkel, the R Core Team, Michael Benesty, Reynald Lescarbeau,
Andrew Ziem, Luca Scrucca, Yuan Tang, and Can Candan.
Description: Misc functions for training and plotting classification and
regression models.
Maintainer: Max Kuhn <Max.Kuhn@pfizer.com>
Depends: R (>= 2.10), lattice (>= 0.20), ggplot2
URL: https://github.com/topepo/caret/
BugReports: https://github.com/topepo/caret/issues
Imports: car, foreach, methods, plyr, nlme, reshape2, stats, stats4,
utils, grDevices
Suggests: BradleyTerry2, e1071, earth (>= 2.2-3), fastICA, gam, ipred,
kernlab, klaR, MASS, ellipse, mda, mgcv, mlbench, nnet, party
(>= 0.9-99992), pls, pROC (>= 1.8), proxy, randomForest, RANN,
spls, subselect, pamr, superpc, Cubist, testthat (>= 0.9.1)
License: GPL (>= 2)
NeedsCompilation: yes
Packaged: 2016-06-13 10:50:50 UTC; kuhna03
Repository: CRAN
Date/Publication: 2016-06-13 16:03:41

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'caret' ...
** package 'caret' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c caret.c -o caret.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o caret.so caret.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/caret/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'caret'
    finding HTML links ... done
    BloodBrain                              html  
    BoxCoxTrans                             html  
    GermanCredit                            html  
    Sacramento                              html  
    as.table.confusionMatrix                html  
    avNNet                                  html  
    bag                                     html  
    bagEarth                                html  
    bagFDA                                  html  
    calibration                             html  
    caret-internal                          html  
    cars                                    html  
    classDist                               html  
    confusionMatrix                         html  
    confusionMatrix.train                   html  
    cox2                                    html  
    createDataPartition                     html  
    dhfr                                    html  
    diff.resamples                          html  
    dotplot.varImp.train                    html  
    downSample                              html  
    dummyVars                               html  
Rd warning: /tmp/RtmpLgZ2c4/R.INSTALL79caed7b51d/caret/man/dummyVars.Rd:73: missing file link 'contr.treatment'
Rd warning: /tmp/RtmpLgZ2c4/R.INSTALL79caed7b51d/caret/man/dummyVars.Rd:124: missing file link 'contr.treatment'
    extractPrediction                       html  
    featurePlot                             html  
    filterVarImp                            html  
    findCorrelation                         html  
    findLinearCombos                        html  
Rd warning: /tmp/RtmpLgZ2c4/R.INSTALL79caed7b51d/caret/man/findLinearCombos.Rd:18: missing file link 'trim.matrix'
Rd warning: /tmp/RtmpLgZ2c4/R.INSTALL79caed7b51d/caret/man/findLinearCombos.Rd:28: missing file link 'trim.matrix'
    format.bagEarth                         html  
    ga_functions                            html  
    gafs.default                            html  
    getSamplingInfo                         html  
    icr                                     html  
    index2vec                               html  
    knn3                                    html  
    knnreg                                  html  
    lattice                                 html  
    lattice.diff.resamples                  html  
Rd warning: /tmp/RtmpLgZ2c4/R.INSTALL79caed7b51d/caret/man/lattice.diff.resamples.Rd:26: missing file link 'dotplot'
Rd warning: /tmp/RtmpLgZ2c4/R.INSTALL79caed7b51d/caret/man/lattice.diff.resamples.Rd:38: missing file link 'bwplot'
    lattice.resamples                       html  
Rd warning: /tmp/RtmpLgZ2c4/R.INSTALL79caed7b51d/caret/man/lattice.resamples.Rd:61: missing file link 'bwplot'
    lattice.rfe                             html  
    learning_curve                          html  
    lift                                    html  
    maxDissim                               html  
    mdrr                                    html  
    modelLookup                             html  
Rd warning: /tmp/RtmpLgZ2c4/R.INSTALL79caed7b51d/caret/man/modelLookup.Rd:30: missing file link 'grepl'
Rd warning: /tmp/RtmpLgZ2c4/R.INSTALL79caed7b51d/caret/man/modelLookup.Rd:63: missing file link 'grepl'
    models                                  html  
    nearZeroVar                             html  
    nullModel                               html  
    oil                                     html  
    panel.lift                              html  
    panel.needle                            html  
    pcaNNet                                 html  
    plot.gafs                               html  
    plot.rfe                                html  
    plot.train                              html  
    plot.varImp.train                       html  
    plotClassProbs                          html  
Rd warning: /tmp/RtmpLgZ2c4/R.INSTALL79caed7b51d/caret/man/plotClassProbs.Rd:24: missing file link 'densityplot'
    plotObsVsPred                           html  
    plsda                                   html  
    postResample                            html  
    pottery                                 html  
    prcomp.resamples                        html  
    preProcess                              html  
    predict.bagEarth                        html  
    predict.gafs                            html  
    predict.knn3                            html  
    predict.knnreg                          html  
    predictors                              html  
    print.confusionMatrix                   html  
    print.train                             html  
    resampleHist                            html  
    resampleSummary                         html  
    resamples                               html  
    rf_seq                                  html  
    rfe                                     html  
    rfeControl                              html  
    rfeFunctions                            html  
    sa_functions                            html  
    safs.default                            html  
    safsControl                             html  
    sbf                                     html  
    sbfControl                              html  
    sbfFunctions                            html  
Rd warning: /tmp/RtmpLgZ2c4/R.INSTALL79caed7b51d/caret/man/sbfFunctions.Rd:40: missing file link 'summary.gam'
Rd warning: /tmp/RtmpLgZ2c4/R.INSTALL79caed7b51d/caret/man/sbfFunctions.Rd:48: missing file link 'summary.gam'
    segmentationData                        html  
    selection                               html  
    sensitivity                             html  
    spatialSign                             html  
    summary.bagEarth                        html  
    tecator                                 html  
    train                                   html  
    trainControl                            html  
    twoClassSim                             html  
    update.safs                             html  
    update.train                            html  
    varImp                                  html  
    varImp.gafs                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (caret)
Making 'packages.html' ... done