clere

Package: clere
Type: Package
Title: Simultaneous Variables Clustering and Regression
Version: 1.1.4
Date: 2016-03-18
Author: Loic Yengo, Mickael Canouil
Maintainer: Loic Yengo <loic.yengo@gmail.com>
Description: Implements an empirical Bayes approach for simultaneous variable clustering and regression. This version also (re)implements in C++ an R script proposed by Howard Bondell that fits the Pairwise Absolute Clustering and Sparsity (PACS) methodology (see Sharma et al (2013) <DOI:10.1080/15533174.2012.707849>).
License: GPL (>= 3)
Copyright: Loic Yengo
Depends: R (>= 2.10), parallel, methods, lasso2
Imports: Rcpp
LinkingTo: Rcpp, RcppEigen
Collate: 'fitClere.R' 'Clere.R' 'sClere-Class.R' 'fitPacs.R'
NeedsCompilation: yes
Packaged: 2016-03-22 00:04:03 UTC; uqlyengo
Repository: CRAN
Date/Publication: 2016-03-22 20:20:14

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'clere' ...
** package 'clere' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c Fit.cpp -o Fit.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c IO.cpp -o IO.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c Model.cpp -o Model.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c ModelSelect.cpp -o ModelSelect.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c clere.cpp -o clere.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c pacs.cpp -o pacs.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o clere.so Fit.o IO.o Model.o ModelSelect.o clere.o pacs.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/clere/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'predict' from package 'stats' in package 'clere'
Creating a generic function for 'summary' from package 'base' in package 'clere'
Creating a generic function for 'plot' from package 'graphics' in package 'clere'
** help
*** installing help indices
  converting help for package 'clere'
    finding HTML links ... done
    Clere-class                             html  
    Pacs-class                              html  
    algoComp                                html  
    clere-package                           html  
    clusters-methods                        html  
    fitClere                                html  
    fitPacs                                 html  
    numExpRealData                          html  
    numExpSimData                           html  
    plot-methods                            html  
    predict-methods                         html  
    summary-methods                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (clere)
Making 'packages.html' ... done