ffbase

Package: ffbase
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
License: GPL-3
Title: Basic Statistical Functions for Package 'ff'
Type: Package
LazyLoad: yes
Author: Edwin de Jonge, Jan Wijffels, Jan van der Laan
Description: Extends the out of memory vectors of 'ff' with
statistical functions and other utilities to ease their usage.
Version: 0.12.3
URL: http://github.com/edwindj/ffbase
Date: 2015-07-25
Depends: R (>= 2.12.0), ff (>= 2.2-11)
Imports: fastmatch, bit
Suggests: testthat, parallel, LaF, biglm
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-03-22 15:04:32 UTC; edwin
Repository: CRAN
Date/Publication: 2016-03-23 00:29:24

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'ffbase' ...
** package 'ffbase' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c binned_sum.c -o binned_sum.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c binned_sumsq.c -o binned_sumsq.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c binned_tabulate.c -o binned_tabulate.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c bySum.c -o bySum.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c bySumsq.c -o bySumsq.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c grouprunningcumsum.c -o grouprunningcumsum.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c grouprunningcumsumindex.c -o grouprunningcumsumindex.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o ffbase.so binned_sum.o binned_sumsq.o binned_tabulate.o bySum.o bySumsq.o grouprunningcumsum.o grouprunningcumsumindex.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/ffbase/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'ffbase'
    finding HTML links ... done
    all.ff                                  html  
    any.ff                                  html  
    as.Date.ff_vector                       html  
    as.character.ff                         html  
Rd warning: /tmp/Rtmp0E7r6O/R.INSTALL34e81396dc13/ffbase/man/as.character.ff.Rd:28: missing file link 'as.character'
    as.ffdf.ffdf                            html  
    as.ram.ffdf                             html  
    bigglm.ffdf                             html  
    binned_sum                              html  
    binned_sumsq                            html  
    binned_tabulate                         html  
    byMean                                  html  
    bySum                                   html  
    c.ff                                    html  
    chunkexpr                               html  
    chunkify                                html  
    compact                                 html  
    condMean                                html  
    condSum                                 html  
    cumsum.ff                               html  
    cut.ff                                  html  
    finding level-2 HTML links ... done

    diff.ff                                 html  
    droplevels.ff                           html  
    droplevels.ffdf                         html  
    duplicated.ff                           html  
Rd warning: /tmp/Rtmp0E7r6O/R.INSTALL34e81396dc13/ffbase/man/duplicated.ff.Rd:66: missing file link 'ffdforder'
    expand.ffgrid                           html  
    ff_arithmetic                           html  
    ff_math                                 html  
    ff_ops                                  html  
    ffappend                                html  
    ffbase-package                          html  
    ffdfappend                              html  
    ffdfdply                                html  
    ffdfrbind.fill                          html  
    ffdfwith                                html  
    ffextract                               html  
    ffextractffdf                           html  
    ffifelse                                html  
    ffmatch                                 html  
    ffordered                               html  
    ffrandom                                html  
    ffrep.int                               html  
Rd warning: /tmp/Rtmp0E7r6O/R.INSTALL34e81396dc13/ffbase/man/ffrep.int.Rd:40: missing file link 'rep.int'
    ffseq                                   html  
    ffseq_len                               html  
Rd warning: /tmp/Rtmp0E7r6O/R.INSTALL34e81396dc13/ffbase/man/ffseq_len.Rd:37: missing file link 'seq_len'
    ffwhich                                 html  
    format.ff_vector                        html  
    grouprunningcumsum                      html  
    hist.ff                                 html  
    hist2d.ff                               html  
    ikey                                    html  
    is.na.ff                                html  
Rd warning: /tmp/Rtmp0E7r6O/R.INSTALL34e81396dc13/ffbase/man/is.na.ff.Rd:41: missing file link 'is.na'
Rd warning: /tmp/Rtmp0E7r6O/R.INSTALL34e81396dc13/ffbase/man/is.na.ff.Rd:41: missing file link 'ffvecapply'
    laf_to_ffdf                             html  
    load.ffdf                               html  
    mean.ff                                 html  
    merge.ffdf                              html  
    min.ff                                  html  
    move.ffdf                               html  
    pack.ffdf                               html  
    pkg-deprecated                          html  
    quantile.ff                             html  
    rle_ff                                  html  
    save.ffdf                               html  
    set_ffbase_logging                      html  
    subset.ff                               html  
    sum.ff                                  html  
    table                                   html  
    tabulate.ff                             html  
    transform.ffdf                          html  
    unique.ff                               html  
    unpack.ffdf                             html  
    with.ffdf                               html  
    within.ffdf                             html  
** building package indices
** testing if installed package can be loaded
* DONE (ffbase)
Making 'packages.html' ... done