graphite

Package: graphite
Version: 1.18.0
Date: 2016-05-03
Title: GRAPH Interaction from pathway Topological Environment
Author: Gabriele Sales <gabriele.sales@unipd.it>, Enrica Calura
<enrica.calura@gmail.com>, Chiara Romualdi
<chiara.romualdi@unipd.it>
Maintainer: Gabriele Sales <gabriele.sales@unipd.it>
Description: Graph objects from pathway topology derived from Biocarta,
HumanCyc, KEGG, NCI, Panther, Reactome and SPIKE databases.
License: AGPL-3
Depends: R (>= 2.10), BiocGenerics, methods
Imports: AnnotationDbi, graph, stats, utils, rappdirs
Suggests: BiocStyle, DEGraph (>= 1.4), hgu133plus2.db, RCytoscape (>=
1.6), RCy3, SPIA (>= 2.2), topologyGSA (>= 1.4.0), clipper,
ALL, testthat
Collate: pathway.R fetch.R conversion.R plot.R utils.R clipper.R
degraph.R graph.R spia.R tables.R topologygsa.R build.R
LazyData: yes
biocViews: Pathways, ThirdPartyClient, GraphAndNetwork, Network,
Reactome, KEGG, BioCarta
NeedsCompilation: no
Packaged: 2016-05-04 04:13:33 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'graphite' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'graphite'
** help
*** installing help indices
  converting help for package 'graphite'
    finding HTML links ... done
    DeprecatedPathwayList-class             html  
    Pathway-class                           html  
    PathwayList-class                       html  
    Pathways-class                          html  
    as.list.DeprecatedPathwayList           html  
    as.list.PathwayList                     html  
    biocarta                                html  
    buildPathway                            html  
    convertIdentifiers                      html  
    cytoscapePlot                           html  
    humancyc                                html  
    kegg                                    html  
    nci                                     html  
    panther                                 html  
    pathwayDatabases                        html  
    pathwayGraph                            html  
    pathways                                html  
    prepareSPIA                             html  
    reactome                                html  
    runClipper                              html  
    runClipperMulti                         html  
    runDEGraph                              html  
    runDEGraphMulti                         html  
    runSPIA                                 html  
    runTopologyGSA                          html  
    runTopologyGSAMulti                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (graphite)
Making 'packages.html' ... done