Last data update: 2014.03.03
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hierfstat
Package: hierfstat
Version: 0.04-22
Date: 2015-11-24
Title: Estimation and Tests of Hierarchical F-Statistics
Authors@R: c(person("Jerome","Goudet",role=c("aut","cre"),email="jerome.goudet@unil.ch"),
person("Thibaut","Jombart",role="aut",email="t.jombart@imperial.ac.uk"))
Author: Jerome Goudet [aut, cre],
Thibaut Jombart [aut]
Maintainer: Jerome Goudet <jerome.goudet@unil.ch>
Imports: gtools, ade4, adegenet
Suggests: ape, pegas, knitr
Description: Allows the estimation of hierarchical F-statistics from haploid or diploid genetic data
with any numbers of levels in the hierarchy, following the algorithm of Yang (Evolution, 1998, 52(4):950-956;
<DOI:10.2307/2411227>. Functions are also given to test via randomisations the significance of each F and variance components,
using the likelihood-ratio statistics G.
Depends: R (>= 2.10)
License: GPL (>= 2)
URL: http://www.r-project.org
BugReports: https://github.com/jgx65/hierfstat/issues
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-12-04 14:43:12 UTC; jgoudet
Repository: CRAN
Date/Publication: 2015-12-04 15:57:50
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'hierfstat' ...
** package 'hierfstat' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'hierfstat'
finding HTML links ... done
AIc html
allele.count html
allelic.richness html
basic.stats html
betas html
boot.ppfis html
boot.ppfst html
boot.vc html
crocrussula html
eucl.dist html
eucl.dist.trait html
exhier html
fstat.from.adegenet html
finding level-2 HTML links ... done
g.stats html
g.stats.glob html
genet.dist html
genind2hierfstat html
genot2al html
getal html
getal.b html
gstat.randtest html
Rd warning: /tmp/RtmpReL0y6/R.INSTALL24ca18743829/hierfstat/man/gstat.randtest.Rd:83: missing file link 'as.randtest'
gtrunchier html
hierfstat html
ind.count html
indpca html
mat2vec html
nb.alleles html
pairwise.WCfst html
pairwise.neifst html
pcoa html
pop.freq html
pp.sigma.loc html
ppfst html
print.pp.fst html
qn2.read.fstat html
read.fstat.data html
read.fstat html
samp.between html
samp.between.within html
samp.within html
sexbias.test html
sim.freq html
sim.genot html
sim.genot.t html
subsampind html
test.between html
test.between.within html
test.g html
test.within html
varcomp html
varcomp.glob html
vec2mat html
wc html
write.bayescan html
write.ped html
write.struct html
writefstat html
yangex html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (hierfstat)
Making 'packages.html' ... done
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