iCheck

Package: iCheck
Type: Package
Title: QC Pipeline and Data Analysis Tools for High-Dimensional
Illumina mRNA Expression Data
Version: 1.2.0
Date: 2015-09-29
Author: Weiliang Qiu <stwxq@channing.harvard.edu>, Brandon Guo
<brandowonder@gmail.com> Christopher Anderson
<christopheranderson84@gmail.com>, Barbara Klanderman
<BKLANDERMAN@partners.org>, Vincent Carey
<stvjc@channing.harvard.edu>, Benjamin Raby
<rebar@channing.harvard.edu>
Maintainer: Weiliang Qiu <stwxq@channing.harvard.edu>
Depends: R (>= 3.2.0), Biobase, lumi, gplots
Imports: stats, graphics, preprocessCore, grDevices, randomForest,
affy, limma, parallel, vsn, GeneSelectMMD, rgl, MASS, lmtest,
scatterplot3d
Suggests:
biocViews: GeneExpression, DifferentialExpression, Microarray,
Preprocessing, DNAMethylation, OneChannel, TwoChannel,
QualityControl
Description: QC pipeline and data analysis tools for high-dimensional
Illumina mRNA expression data.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2016-05-04 06:34:08 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'iCheck' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'iCheck'
    finding HTML links ... done
    LumiBatch2Table                         html  
    R2PlotFunc                              html  
    finding level-2 HTML links ... done

    genExprSet                              html  
    genSimData.BayesNormal                  html  
    getPCAFunc                              html  
    glmWrapper                              html  
    lkhrWrapper                             html  
    lmFitPaired                             html  
    lmFitWrapper                            html  
    pca2DPlot                               html  
    pca3DPlot                               html  
    plotCurves                              html  
    plotQCCurves                            html  
    plotSamplep95p05                        html  
    quantilePlot                            html  
    sortExpressionSet                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (iCheck)
Making 'packages.html' ... done