lumi : BeadArray Specific Methods for Illumina Methylation and Expression Microarrays

Package: lumi
Type: Package
Title: BeadArray Specific Methods for Illumina Methylation and
Expression Microarrays
Version: 2.24.0
Date: 2015-07-02
Depends: R (>= 2.10), Biobase (>= 2.5.5)
Imports: affy (>= 1.23.4), methylumi (>= 2.3.2), GenomicFeatures,
GenomicRanges, annotate, Biobase (>= 2.5.5), lattice, mgcv (>=
1.4-0), nleqslv, KernSmooth, preprocessCore, RSQLite, DBI,
AnnotationDbi, MASS, graphics, stats, stats4, methods
Suggests: beadarray, limma, vsn, lumiBarnes, lumiHumanAll.db,
lumiHumanIDMapping, genefilter, RColorBrewer
Author: Pan Du, Richard Bourgon, Gang Feng, Simon Lin
Maintainer: Pan Du <dupan.mail@gmail.com>
Description: The lumi package provides an integrated solution for the Illumina microarray data analysis. It includes functions of Illumina BeadStudio (GenomeStudio) data input, quality control, BeadArray-specific variance stabilization, normalization and gene annotation at the probe level. It also includes the functions of processing Illumina methylation microarrays, especially Illumina Infinium methylation microarrays.
License: LGPL (>= 2)
LazyLoad: yes
biocViews: Microarray, OneChannel, Preprocessing, DNAMethylation,
QualityControl, TwoChannel
NeedsCompilation: no
Packaged: 2016-05-04 02:59:12 UTC; biocbuild