isomiRs

Package: isomiRs
Version: 1.0.3
Date: 2016-06-01
Type: Package
Title: Analyze isomiRs and miRNAs from small RNA-seq
Description: Characterization of miRNAs and isomiRs, clustering and
differential expression.
biocViews: miRNA, RNASeq, DifferentialExpression, Clustering
Suggests: knitr, RUnit, BiocStyle
Depends: R (>= 3.2), DiscriMiner, IRanges, S4Vectors, GenomicRanges,
SummarizedExperiment (>= 0.2.0)
Imports: BiocGenerics (>= 0.7.5), DESeq2, plyr, dplyr, RColorBrewer,
gplots, methods, ggplot2, GGally
Author: Lorena Pantano, Georgia Escaramis
Maintainer: Lorena Pantano <lorena.pantano@gmail.com>
License: MIT + file LICENSE
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-06-02 06:05:46 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'isomiRs' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'isomiRs'
    finding HTML links ... done
    IsomirDataSeq                           html  
Rd warning: /tmp/RtmpwFK4HN/R.INSTALL49dc2757e41d/isomiRs/man/IsomirDataSeq.Rd:10: missing file link 'SummarizedExperiment'
    IsomirDataSeqFromFiles                  html  
Rd warning: /tmp/RtmpwFK4HN/R.INSTALL49dc2757e41d/isomiRs/man/IsomirDataSeqFromFiles.Rd:22: missing file link 'SummarizedExperiment'
    counts                                  html  
    isoCounts                               html  
    isoDE                                   html  
    isoNorm                                 html  
    isoPLSDA                                html  
    isoPLSDAplot                            html  
    isoPlot                                 html  
    isoPlotPosition                         html  
    isoSelect                               html  
    isoTop                                  html  
    mirData                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (isomiRs)
Making 'packages.html' ... done