lfa

Package: lfa
Title: Logistic Factor Analysis for Categorical Data
Version: 1.2.2
Date: 2015-10-09
Author: Wei Hao, Minsun Song, John D. Storey
Maintainer: Wei Hao <whao@princeton.edu>, John D. Storey <jstorey@princeton.edu>
LazyData: true
Description: LFA is a method for a PCA analogue on Binomial data via estimation
of latent structure in the natural parameter.
Imports: corpcor
Depends: R (>= 3.2)
Suggests: knitr, ggplot2
VignetteBuilder: knitr
License: GPL-3
biocViews: SNP, DimensionReduction, PrincipalComponent
BugReports: https://github.com/StoreyLab/lfa/issues
URL: https://github.com/StoreyLab/lfa
NeedsCompilation: yes
Packaged: 2016-05-16 05:44:54 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'lfa' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c fastmat.c -o fastmat.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c lfa-init.c -o lfa-init.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c lfa.c -o lfa.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c lreg.c -o lreg.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o lfa.so fastmat.o lfa-init.o lfa.o lreg.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/lfa/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'lfa'
    finding HTML links ... done
    af                                      html  
    af_snp                                  html  
    center                                  html  
    centerscale                             html  
    hgdp_subset                             html  
    lfa                                     html  
    model.gof                               html  
    pca_af                                  html  
    read.bed                                html  
    read.tped.recode                        html  
    trunc.svd                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (lfa)
Making 'packages.html' ... done