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Last data update: 2014.03.03

matrixStats

Package: matrixStats
Version: 0.50.2
Depends: R (>= 2.12.0)
Imports: methods
Suggests: base64enc, ggplot2, knitr, microbenchmark, R.devices, R.rsp
VignetteBuilder: R.rsp
Date: 2016-04-24
Title: Functions that Apply to Rows and Columns of Matrices (and to
Vectors)
Authors@R: c(
person("Henrik", "Bengtsson", role=c("aut", "cre", "cph"),
email="henrikb@braju.com"),
person("Hector", "Corrada Bravo", role="ctb"),
person("Robert", "Gentleman", role="ctb"),
person("Ola", "Hossjer", role="ctb"),
person("Harris", "Jaffee", role="ctb"),
person("Dongcan", "Jiang", role="ctb"),
person("Peter", "Langfelder", role="ctb"))
Author: Henrik Bengtsson [aut, cre, cph], Hector Corrada Bravo [ctb], Robert Gentleman [ctb], Ola Hossjer [ctb], Harris Jaffee [ctb], Dongcan Jiang [ctb], Peter Langfelder [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Description: High-performing functions operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized. There are also optimized vector-based methods, e.g. binMeans(), madDiff() and weightedMedians().
License: Artistic-2.0
LazyLoad: TRUE
NeedsCompilation: yes
ByteCompile: TRUE
biocViews: Infrastructure, Statistics
URL: https://github.com/HenrikBengtsson/matrixStats
BugReports: https://github.com/HenrikBengtsson/matrixStats/issues
Packaged: 2016-04-24 16:00:59 UTC; hb
Repository: CRAN
Date/Publication: 2016-04-24 20:48:52

● BiocViews: Infrastructure, Statistics
● 0 images, 36 functions, 0 datasets
● Reverse Depends: 13

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'matrixStats' ...
** package 'matrixStats' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c allocMatrix2.c -o allocMatrix2.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c anyMissing.c -o anyMissing.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c binCounts.c -o binCounts.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c binMeans.c -o binMeans.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c colCounts.c -o colCounts.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c colOrderStats.c -o colOrderStats.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c colRanges.c -o colRanges.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c diff2.c -o diff2.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c indexByRow.c -o indexByRow.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c logSumExp.c -o logSumExp.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c meanOver.c -o meanOver.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c productExpSumLog.c -o productExpSumLog.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c psortKM.c -o psortKM.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rowCounts.c -o rowCounts.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rowCumMinMaxs.c -o rowCumMinMaxs.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rowCumprods.c -o rowCumprods.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rowCumsums.c -o rowCumsums.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rowDiffs.c -o rowDiffs.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rowLogSumExp.c -o rowLogSumExp.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rowMads.c -o rowMads.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rowMedians.c -o rowMedians.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rowOrderStats.c -o rowOrderStats.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rowRanges.c -o rowRanges.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rowRanksWithTies.c -o rowRanksWithTies.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rowVars.c -o rowVars.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c signTabulate.c -o signTabulate.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c sumOver.c -o sumOver.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c validateIndices.c -o validateIndices.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c weightedMean.c -o weightedMean.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c weightedMedian.c -o weightedMedian.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c x_OP_y.c -o x_OP_y.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o matrixStats.so allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o meanOver.o productExpSumLog.o psortKM.o rowCounts.o rowCumMinMaxs.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowVars.o signTabulate.o sumOver.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/matrixStats/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'matrixStats'
    finding HTML links ... done
    allocMatrix                             html  
    anyMissing                              html  
    binCounts                               html  
    binMeans                                html  
    diff2                                   html  
    indexByRow                              html  
    logSumExp                               html  
    matrixStats-package                     html  
    meanOver                                html  
    rowAvgsPerColSet                        html  
    rowCollapse                             html  
Rd warning: /tmp/RtmpodOkBE/R.INSTALL1d7f5bfec67a/matrixStats/man/rowCollapse.Rd:63: missing file link '['
    rowCounts                               html  
    rowCumsums                              html  
Rd warning: /tmp/RtmpodOkBE/R.INSTALL1d7f5bfec67a/matrixStats/man/rowCumsums.Rd:83: missing file link 'cumprod'
Rd warning: /tmp/RtmpodOkBE/R.INSTALL1d7f5bfec67a/matrixStats/man/rowCumsums.Rd:84: missing file link 'cummin'
Rd warning: /tmp/RtmpodOkBE/R.INSTALL1d7f5bfec67a/matrixStats/man/rowCumsums.Rd:84: missing file link 'cummax'
    rowDiffs                                html  
    rowIQRs                                 html  
    rowLogSumExps                           html  
    rowMedians                              html  
    rowOrderStats                           html  
    rowProds                                html  
Rd warning: /tmp/RtmpodOkBE/R.INSTALL1d7f5bfec67a/matrixStats/man/rowProds.Rd:56: missing file link 'is.nan'
    rowQuantiles                            html  
    rowRanges                               html  
Rd warning: /tmp/RtmpodOkBE/R.INSTALL1d7f5bfec67a/matrixStats/man/rowRanges.Rd:56: missing file link 'pmin.int'
    rowRanks                                html  
    rowSds                                  html  
    rowTabulates                            html  
    rowVars                                 html  
    rowWeightedMeans                        html  
    rowWeightedMedians                      html  
    signTabulate                            html  
    sumOver                                 html  
    validateIndices                         html  
    varDiff                                 html  
Rd warning: /tmp/RtmpodOkBE/R.INSTALL1d7f5bfec67a/matrixStats/man/varDiff.Rd:28: missing file link 'var'
Rd warning: /tmp/RtmpodOkBE/R.INSTALL1d7f5bfec67a/matrixStats/man/varDiff.Rd:73: missing file link 'var'
    weightedMad                             html  
    weightedMean                            html  
    weightedMedian                          html  
    weightedVar                             html  
Rd warning: /tmp/RtmpodOkBE/R.INSTALL1d7f5bfec67a/matrixStats/man/weightedVar.Rd:72: missing file link 'var'
    xUNDERSCOREOPUNDERSCOREy                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (matrixStats)
Making 'packages.html' ... done