moveHMM

Package: moveHMM
Type: Package
Title: Animal Movement Modelling using Hidden Markov Models
Version: 1.2
Date: 2016-06-04
Author: Theo Michelot, Roland Langrock, Toby Patterson, Eric Rexstad (ctb)
Maintainer: Theo Michelot <tmichelot1@sheffield.ac.uk>
Description: Provides tools for animal movement modelling using hidden Markov
models. These include processing of tracking data, fitting hidden Markov models
to movement data, visualization of data and fitted model, decoding of the
state process...
URL: https://github.com/TheoMichelot/moveHMM,
https://cran.r-project.org/ package=moveHMM
License: GPL-3
LazyData: TRUE
Depends: CircStats
Imports: Rcpp, boot, MASS, sp, ggplot2, ggmap
LinkingTo: Rcpp, RcppArmadillo
Suggests: testthat, knitr
VignetteBuilder: knitr
RoxygenNote: 5.0.0
NeedsCompilation: yes
Packaged: 2016-06-04 18:45:54 UTC; theo
Repository: CRAN
Date/Publication: 2016-06-04 12:43:55

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'moveHMM' ...
** package 'moveHMM' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c nLogLike.cpp -o nLogLike.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c trMatrix.cpp -o trMatrix.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o moveHMM.so RcppExports.o nLogLike.o trMatrix.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/moveHMM/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'moveHMM'
    finding HTML links ... done
    AIC.moveHMM                             html  
    CI                                      html  
    allProbs                                html  
    angleCI                                 html  
    dexp_rcpp                               html  
    dgamma_rcpp                             html  
    dlnorm_rcpp                             html  
    dvm_rcpp                                html  
    dweibull_rcpp                           html  
    dwrpcauchy_rcpp                         html  
    exGen                                   html  
    example                                 html  
    fitHMM                                  html  
    is.moveData                             html  
    is.moveHMM                              html  
    logAlpha                                html  
    logBeta                                 html  
    moveData                                html  
    moveHMM                                 html  
    n2w                                     html  
    nLogLike                                html  
    nLogLike_rcpp                           html  
    parDef                                  html  
    plot.moveData                           html  
    plot.moveHMM                            html  
    plotPR                                  html  
    plotSat                                 html  
    finding level-2 HTML links ... done

    plotStates                              html  
    prepData                                html  
    print.moveHMM                           html  
    pseudoRes                               html  
    simData                                 html  
    stateProbs                              html  
    summary.moveData                        html  
    trMatrix_rcpp                           html  
    turnAngle                               html  
    viterbi                                 html  
    w2n                                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (moveHMM)
Making 'packages.html' ... done