Last data update: 2014.03.03
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nucleR
Package: nucleR
Type: Package
Title: Nucleosome positioning package for R
Version: 2.4.0
Date: 2016-02-24
Author: Oscar Flores, Ricard Illa
Maintainer: Ricard Illa <ricard.illa@irbbarcelona.org>
Description: Nucleosome positioning for Tiling Arrays and NGS experiments.
License: LGPL (>= 3)
Depends: ShortRead
Imports: methods, BiocGenerics, S4Vectors (>= 0.9.39), IRanges (>=
2.5.27), Biobase, GenomicRanges (>= 1.23.16), Rsamtools, stats,
graphics, parallel
Suggests: Starr
LazyLoad: yes
biocViews: ChIPSeq, Microarray, Sequencing, Genetics
NeedsCompilation: no
Packaged: 2016-05-04 04:09:14 UTC; biocbuild
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'nucleR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'nucleR'
finding HTML links ... done
controlCorrection html
coverage.rpm html
finding level-2 HTML links ... done
export.bed html
export.wig html
filterFFT html
fragmentLenDetect html
mergeCalls html
nucleR-package html
nucleosome_htseq html
nucleosome_tiling html
pcKeepCompDetect html
peakDetection html
peakScoring html
plotPeaks html
processReads html
processTilingArray html
Rd warning: /tmp/RtmppAHDWS/R.INSTALLcf3411848c9/nucleR/man/processTilingArray.Rd:99: missing file link 'ExpressionSet'
readBAM html
syntheticNucMap html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (nucleR)
Making 'packages.html' ... done
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