oro.nifti

Package: oro.nifti
Version: 0.5.2
Date: 2015-04-24
Title: Rigorous - NIfTI + ANALYZE + AFNI : Input / Output
Authors@R: c(person("Brandon", "Whitcher", role = c("aut", "cre"),
email = "bwhitcher@gmail.com"),
person("Volker", "Schmid", role = "aut", email="volker.schmid@lmu.de"),
person("Andrew", "Thornton", role = "aut", email = "zeripath@gmail.com"),
person("Karsten", "Tabelow", role = "ctb",
email = "karsten.tabelow@wias-berlin.de"),
person("Jon", "Clayden", role = "ctb", email = "code@clayden.org"),
person("John", "Muschelli", role = "ctb", email = "muschellij2@gmail.com"))
Description: Functions for the input/output and visualization of
medical imaging data that follow either the ANALYZE, NIfTI or AFNI
formats. This package is part of the Rigorous Analytics bundle.
Depends: R (>= 2.14.0)
Suggests: XML, testthat
Imports: bitops, splines, graphics, grDevices, methods, utils, abind
Enhances: dcemriS4, fmri, oro.dicom
License: BSD_3_clause + file LICENSE
URL: http://rig.oro.us.com
LazyData: true
LazyDataCompression: gzip
Collate: 'auditTrail.R' 'niftiS4.R' 'analyzeS4.R' 'afniS4.R' 'is.R'
'nifti_assign.R' 'coerce.R' 'writeS4.R' 'convert_anlz.R'
'convert_nifti.R' 'cal_img.R' 'drop_img_dim.R' 'hotmetal.R'
'miscellaneous.R' 'plot.R' 'blend.R' 'readS4.R' 'remove.R'
'tim_colors.R' 'transform.R' 'wrappers.R' 'onefile.R'
'voxdim.R' 'anlz_Operators.R' 'Operators.R' 'zero_trans.R'
'aux_file.R' 'cal_max.R' 'cal_min.R' 'descrip.R' 'glmax.R'
'glmin.R' 'pixdim.R' 'qform_code.R' 'scl_inter.R' 'scl_slope.R'
'sform_code.R' 'vox_offset.R' 'bitpix.R' 'data_type.R'
'datatype.R' 'db_name.R' 'dim_.R' 'dim_info.R' 'extender.R'
'extents.R' 'intent_code.R' 'intent_name.R' 'intent_p1.R'
'intent_p2.R' 'intent_p3.R' 'magic.R' 'qoffset_x.R'
'qoffset_y.R' 'qoffset_z.R' 'quatern_b.R' 'quatern_c.R'
'quatern_d.R' 'quaternion.R' 'regular.R' 'session_error.R'
'sizeof_hdr.R' 'slice_code.R' 'slice_duration.R' 'slice_end.R'
'slice_start.R' 'srow_x.R' 'srow_y.R' 'srow_z.R' 'toffset.R'
'xyzt_units.R' 'cal_units.R' 'compressed.R' 'dim_un0.R'
'exp_date.R' 'exp_time.R' 'field_skip.R' 'funused1.R'
'funused2.R' 'funused3.R' 'generated.R' 'hist_un0.R'
'hkey_un0.R' 'omax.R' 'omin.R' 'orient.R' 'origin.R'
'patient_id.R' 'scannum.R' 'smax.R' 'smin.R' 'start_field.R'
'unused1.R' 'verified.R' 'views.R' 'vols_added.R' 'vox_units.R'
'zzz.R'
NeedsCompilation: no
Packaged: 2015-05-07 19:52:00 UTC; brandon
Author: Brandon Whitcher [aut, cre],
Volker Schmid [aut],
Andrew Thornton [aut],
Karsten Tabelow [ctb],
Jon Clayden [ctb],
John Muschelli [ctb]
Maintainer: Brandon Whitcher <bwhitcher@gmail.com>
Repository: CRAN
Date/Publication: 2015-05-07 23:02:13

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'oro.nifti' ...
** package 'oro.nifti' successfully unpacked and MD5 sums checked
** R
** demo
** inst
** preparing package for lazy loading
Creating a generic function for 'image' from package 'graphics' in package 'oro.nifti'
** help
*** installing help indices
  converting help for package 'oro.nifti'
    finding HTML links ... done
    afni-class                              html  
    anlz-class                              html  
    anlz-nifti-ops                          html  
    anlz                                    html  
    as.anlz                                 html  
    as.nifti                                html  
    audit_trail-methods                     html  
    audit_trail                             html  
    aux_file-methods                        html  
    bitpix-methods                          html  
    bitwise                                 html  
    blend-methods                           html  
    cal_img                                 html  
    cal_max-methods                         html  
    cal_min-methods                         html  
    cal_units-methods                       html  
    coerce-methods                          html  
    compressed-methods                      html  
    convert_afni                            html  
    convert_anlz                            html  
    convert_nifti                           html  
    data_type-methods                       html  
    datatype-methods                        html  
    db_name-methods                         html  
    descrip-methods                         html  
    dim_-methods                            html  
    dim_info-methods                        html  
    dim_un0-methods                         html  
    drop_img_dim                            html  
    exp_date-methods                        html  
    exp_time-methods                        html  
    extender-methods                        html  
    extents-methods                         html  
    field_skip-methods                      html  
    funused1-methods                        html  
    funused2-methods                        html  
    funused3-methods                        html  
    generated-methods                       html  
    glmax-methods                           html  
    glmin-methods                           html  
    hist_un0-methods                        html  
    hkey_un0-methods                        html  
    hotmetal                                html  
    image-methods                           html  
    integerTranslation                      html  
    intent_code-methods                     html  
    intent_name-methods                     html  
    intent_p1-methods                       html  
    intent_p2-methods                       html  
    intent_p3-methods                       html  
    is_afni                                 html  
    is_anlz                                 html  
    is_nifti                                html  
    magic-methods                           html  
    miscellaneous                           html  
    nifti-class                             html  
    nifti                                   html  
    niftiAuditTrail-class                   html  
    niftiExtension-class                    html  
    niftiExtensionSection-class             html  
    nifti_assign-methods                    html  
    niftiops                                html  
    omax-methods                            html  
    omin-methods                            html  
    onefile                                 html  
    orient-methods                          html  
    orientation-methods                     html  
    origin-methods                          html  
    orthographic-methods                    html  
    overlay-methods                         html  
    patient_id-methods                      html  
    performPermutation                      html  
    pixdim-methods                          html  
    qform_code-methods                      html  
    qoffset_x-methods                       html  
    qoffset_y-methods                       html  
    qoffset_z-methods                       html  
    quatern_b-methods                       html  
    quatern_c-methods                       html  
    quatern_d-methods                       html  
    quaternion2rotation                     html  
    read_afni                               html  
    read_anlz                               html  
    read_nifti                              html  
    regular-methods                         html  
    remove                                  html  
    reorient                                html  
    scannum-methods                         html  
    scl_inter-methods                       html  
    scl_slope-methods                       html  
    session_error-methods                   html  
    sform_code-methods                      html  
    sizeof_hdr-methods                      html  
    slice_code-methods                      html  
    slice_duration-methods                  html  
    slice_end-methods                       html  
    slice_start-methods                     html  
    smax-methods                            html  
    smin-methods                            html  
    srow_x-methods                          html  
    srow_y-methods                          html  
    srow_z-methods                          html  
    start_field-methods                     html  
    tim_colors                              html  
    toffset-methods                         html  
    transformCoordinate                     html  
    unused1-methods                         html  
    verified-methods                        html  
    views-methods                           html  
    vols_added-methods                      html  
    vox_offset-methods                      html  
    vox_units-methods                       html  
    voxdim                                  html  
    write_afni-methods                      html  
    write_anlz                              html  
    write_nifti                             html  
    xyzt_units-methods                      html  
    zero_trans                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (oro.nifti)
Making 'packages.html' ... done