paramlink

Package: paramlink
Type: Package
Title: Parametric Linkage Analysis in R
Version: 0.9-8
Date: 2016-04-07
Author: Magnus Dehli Vigeland
Maintainer: Magnus Dehli Vigeland <magnusdv@studmed.uio.no>
Description: Parametric linkage analysis and other likelihood-based pedigree analyses based on the Elston-Stewart algorithm, including singlepoint LOD scores, power analysis and computation of marker genotype distributions. Multipoint analysis is provided through a convenient MERLIN wrapper. Includes many utility functions for creating, manipulating and plotting pedigrees, markers and linkage results.
Depends: R (>= 3.2), kinship2
Imports: graphics, maxLik, stats, utils
SystemRequirements: For the MERLIN wrapper, MERLIN
(www.sph.umich.edu/csg/abecasis/merlin) must be installed and
pointed to in the PATH environment variable.
License: GPL (>= 2)
LazyData: Yes
NeedsCompilation: no
Packaged: 2016-04-27 21:15:18 UTC; magnusdv
Repository: CRAN
Date/Publication: 2016-04-28 00:28:23

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'paramlink' ...
** package 'paramlink' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'paramlink'
    finding HTML links ... done
    Xped                                    html  
    allGenotypes                            html  
    as.data.frame.linkdat                   html  
    as.matrix.linkdat                       html  
    createPedigree                          html  
    dominant                                html  
    examineKinships                         html  
    finding level-2 HTML links ... done

    exclusionPower                          html  
    inbreeding                              html  
    likelihood                              html  
    linkage.power                           html  
    linkageSim                              html  
    linkdat                                 html  
    linkdat.utils                           html  
    linkres                                 html  
    lod                                     html  
    lod.peaks                               html  
    markerSim                               html  
    markers                                 html  
    mergePed                                html  
    merlin                                  html  
    modify                                  html  
    oneMarkerDistribution                   html  
    paramlink-package                       html  
    plot.linkdat                            html  
    randomPed                               html  
    readDatfile                             html  
    relationLR                              html  
    setAvailable                            html  
    setModel                                html  
    simpleSim                               html  
    toyped                                  html  
    twoMarkerDistribution                   html  
    twoloops                                html  
** building package indices
** testing if installed package can be loaded
* DONE (paramlink)
Making 'packages.html' ... done