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Last data update: 2014.03.03

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Results 1 - 3 of 3 found.
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IBDsim : Simulation of Chromosomal Regions Shared by Family Members

Package: IBDsim
Type: Package
Title: Simulation of Chromosomal Regions Shared by Family Members
Version: 0.9-6
Date: 2016-04-25
Author: Magnus Dehli Vigeland
Maintainer: Magnus Dehli Vigeland <magnusdv@studmed.uio.no>
Description: R package for simulation of IBD sharing among family members. Using sex specific recombination rates from the Decode map (2010) of the human genome, phased chromosomes are simulated for all pedigree members, either by unconditional 'gene dropping' or conditional on a specified IBD pattern. Regions compatible with the query IBD pattern (possibly different from the conditional pattern) are subsequently detected and summarized.
Depends: R (>= 3.2), paramlink (>= 0.9)
Imports: stats
License: GPL (>= 2)
LazyData: Yes
NeedsCompilation: yes
Packaged: 2016-04-27 20:04:41 UTC; magnusdv
Repository: CRAN
Date/Publication: 2016-04-28 11:50:02

● Data Source: CranContrib
● 11 images, 2 functions, 2 datasets
● Reverse Depends: 0

Familias : Probabilities for Pedigrees Given DNA Data

Package: Familias
Type: Package
Title: Probabilities for Pedigrees Given DNA Data
Version: 2.4
Date: 2016-02-15
Author: Petter Mostad, Thore Egeland, Ivar Simonsson
Maintainer: Petter Mostad <mostad@chalmers.se>
Depends: R (>= 1.8.0), kinship2, paramlink, Rsolnp
Description:
An interface to the core Familias functions (www.familias.name),
which are programmed in C++.
License: GPL-2
LazyLoad: yes
URL: http://www.familias.name
NeedsCompilation: yes
Packaged: 2016-02-18 09:47:26 UTC; mostad
Repository: CRAN
Date/Publication: 2016-02-18 15:13:56

● Data Source: CranContrib
● 8 images, 8 functions, 0 datasets
● Reverse Depends: 1

euroMix : Calculations for DNA Mixtures

Package: euroMix
Type: Package
Title: Calculations for DNA Mixtures
Version: 1.1.1
Date: 2015-12-16
Author: Guro Dorum and Thore Egeland
Maintainer: Guro Dorum <guro.dorum@nmbu.no>
Description: Calculations for DNA mixtures accounting for possibly inbred pedigrees (simulations with conditioning, LR). Calculation of exact p-values.
Depends: R (>= 3.0), paramlink (>= 0.9-7), Familias, forensim
Imports: graphics, utils
License: GPL (>= 2)
LazyLoad: yes
NeedsCompilation: yes
Packaged: 2015-12-16 11:29:03 UTC; gdorum
Repository: CRAN
Date/Publication: 2015-12-16 15:10:48

● Data Source: CranContrib
● 0 images, 16 functions, 4 datasets
● Reverse Depends: 0