parmigene

Package: parmigene
Version: 1.0.2
Date: 2012-07-18
Title: Parallel Mutual Information estimation for Gene Network
reconstruction.
Author: Gabriele Sales <gabriele.sales@unipd.it>, Chiara Romualdi
<chiara.romualdi@unipd.it>
Maintainer: Gabriele Sales <gabriele.sales@unipd.it>
Description: The package provides a parallel estimation of the mutual
information based on entropy estimates from k-nearest neighbors
distances and algorithms for the reconstruction of gene
regulatory networks.
License: AGPL-3
Packaged: 2012-07-21 07:31:37 UTC; ripley
Repository: CRAN
Date/Publication: 2012-07-23 19:57:03

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'parmigene' ...
** package 'parmigene' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c bridge.c -o bridge.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c grid.c -o grid.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c inference.c -o inference.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c mi.c -o mi.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -fopenmp -fpic  -g -O2  -c points.c -o points.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o parmigene.so bridge.o grid.o inference.o mi.o points.o -fopenmp -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/parmigene/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'parmigene'
    finding HTML links ... done
    aracne.a                                html  
    aracne.m                                html  
    clr                                     html  
    knnmi                                   html  
    knnmi.all                               html  
    knnmi.cross                             html  
    mrnet                                   html  
** building package indices
** testing if installed package can be loaded
* DONE (parmigene)
Making 'packages.html' ... done