pathview

Package: pathview
Type: Package
Title: a tool set for pathway based data integration and visualization
Version: 1.12.0
Date: 2016-05-03
Author: Weijun Luo
Maintainer: Weijun Luo <luo_weijun@yahoo.com>
Description: Pathview is a tool set for pathway based data integration
and visualization. It maps and renders a wide variety of
biological data on relevant pathway graphs. All users need is
to supply their data and specify the target pathway. Pathview
automatically downloads the pathway graph data, parses the data
file, maps user data to the pathway, and render pathway graph
with the mapped data. In addition, Pathview also seamlessly
integrates with pathway and gene set (enrichment) analysis tools for
large-scale and fully automated analysis.
biocViews: Pathways, GraphAndNetwork, Visualization, GeneSetEnrichment,
DifferentialExpression, GeneExpression, Microarray, RNASeq,
Genetics, Metabolomics, Proteomics, SystemsBiology, Sequencing
Depends: R (>= 2.10), org.Hs.eg.db
Imports: KEGGgraph, XML, Rgraphviz, graph, png, AnnotationDbi,
KEGGREST, methods, utils
Suggests: gage, org.Mm.eg.db, RUnit, BiocGenerics
License: GPL (>=3.0)
URL: http://pathview.uncc.edu/
LazyLoad: yes
NeedsCompilation: no
Packaged: 2016-05-04 04:54:40 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'pathview' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'pathview'
    finding HTML links ... done
    combineKEGGnodes                        html  
    cpd.accs                                html  
    cpdidmap                                html  
    demo.data                               html  
    download.kegg                           html  
    eg2id                                   html  
    kegg.species.code                       html  
    korg                                    html  
    mol.sum                                 html  
    node.color                              html  
    node.info                               html  
    node.map                                html  
    pathview-internal                       html  
    pathview-package                        html  
    pathview                                html  
    sim.mol.data                            html  
    wordwrap                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (pathview)
Making 'packages.html' ... done