pdInfoBuilder

Package: pdInfoBuilder
Title: Platform Design Information Package Builder
Description: Builds platform design information packages.
These consist of a SQLite database containing feature-level
data such as x, y position on chip and
featureSet ID. The database also incorporates featureSet-level
annotation data. The products of this packages are used by the oligo pkg.
Version: 1.36.0
Author: Seth Falcon, Vince Carey, Matt Settles, Kristof de Beuf, Benilton Carvalho
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
LazyLoad: yes
Depends: R (>= 3.2.0), methods, Biobase (>= 2.27.3), RSQLite (>=
1.0.0), affxparser (>= 1.39.4), oligo (>= 1.31.5)
Imports: Biostrings (>= 2.35.12), BiocGenerics (>= 0.13.11), DBI (>=
0.3.1), IRanges (>= 2.1.43), oligoClasses (>= 1.29.6),
S4Vectors (>= 0.5.22)
License: Artistic-2.0
Collate: AllClasses.R AllGenerics.R initialize-methods.R utils.R
schema.R initDb.R initDb.snp6.R pmmmBlockToMat.R loaders.R
loaders.snp6.R makePdInfoPackage-methods.R chipName-methods.R
getGeometry-methods.R pdBuilderV2TiledRegion.R
pdBuilderV2ExonTranscription.R pdBuilderV2Gene.R
pdBuilderV2HTA2.R pdBuilderV2AffyTiling.R
pdBuilderV2NgsExpression.R pdBuilderV2AffyExpressionHT.R
pdBuilderV2AffySNP.R pdBuilderV2AffySNPCNV.R pdBuilderV2miRNA.R
pdBuilderV3GenericArray.R
biocViews: Annotation, Infrastructure
NeedsCompilation: yes
Packaged: 2016-05-04 02:58:06 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'pdInfoBuilder' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c pdInfoBuilder.c -o pdInfoBuilder.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o pdInfoBuilder.so pdInfoBuilder.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/pdInfoBuilder/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'pdInfoBuilder'
    finding HTML links ... done
    AffyExpressionPDInfoPkgSeed-class       html  
    AffySNPCNVPDInfoPkgSeed-class           html  
    AffySNPCNVPDInfoPkgSeed2-class          html  
    AffySNPPDInfoPkgSeed-class              html  
    AffySNPPDInfoPkgSeed2-class             html  
    AffySTPDInfoPkgSeed-class               html  
    AffyTilingPDInfoPkgSeed-class           html  
    GenericArrayFunctions                   html  
    NgsExpressionPDInfoPkgSeed-class        html  
    NgsTilingPDInfoPkgSeed-class            html  
    NimbleGenPDInfoPkgSeed-class            html  
    chipName                                html  
    getGeometry                             html  
    makePdInfoPackage                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (pdInfoBuilder)
Making 'packages.html' ... done