pec

Package: pec
Title: Prediction Error Curves for Risk Prediction Models in Survival
Analysis
Version: 2.4.9
Author: Thomas A. Gerds
Description: Validation of risk predictions obtained from survival models and
competing risk models based on censored data using inverse weighting and
cross-validation.
Depends: R (>= 2.9.0), prodlim (>= 1.4.9)
Imports: foreach (>= 1.4.2), rms (>= 4.2-0), survival (>= 2.37-7),
timereg (>= 1.8.9)
Suggests: randomForestSRC, party, cmprsk (>= 2.2-7), rpart, doMC,
CoxBoost, crrstep, riskRegression (>= 1.0.8), lava (>= 1.4.1),
Hmisc (>= 3.14-4)
Maintainer: Thomas A. Gerds <tag@biostat.ku.dk>
License: GPL (>= 2)
Packaged: 2016-05-14 15:36:27 UTC; tag
RoxygenNote: 5.0.1
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2016-05-14 23:19:27

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'pec' ...
** package 'pec' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c SNull.c -o SNull.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c auc.c -o auc.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c brier_score.c -o brier_score.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c ccr.c -o ccr.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c cindex.c -o cindex.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c pec.c -o pec.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c pecResiduals.c -o pecResiduals.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c survest_cox_aalen.c -o survest_cox_aalen.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o pec.so SNull.o auc.o brier_score.o ccr.o cindex.o pec.o pecResiduals.o survest_cox_aalen.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/pec/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'pec'
    finding HTML links ... done
    GBSG2                                   html  
    Pbc3                                    html  
    R2                                      html  
    Special                                 html  
    calPlot                                 html  
    finding level-2 HTML links ... done

    cindex                                  html  
    cost                                    html  
    coxboost                                html  
    crps                                    html  
    ipcw                                    html  
    pec                                     html  
    pecCforest                              html  
    pecCtree                                html  
    pecRpart                                html  
    plot.calibrationPlot                    html  
    plot.pec                                html  
    plotPredictEventProb                    html  
    plotPredictSurvProb                     html  
    predictEventProb                        html  
    predictLifeYearsLost                    html  
    predictRestrictedMeanTime               html  
    predictSurvProb                         html  
    print.pec                               html  
    reclass                                 html  
    resolvesplitMethod                      html  
    selectCox                               html  
    selectFGR                               html  
    simCost                                 html  
    threecity                               html  
    wallyPlot                               html  
** building package indices
** testing if installed package can be loaded
* DONE (pec)
Making 'packages.html' ... done