rags2ridges

Package: rags2ridges
Type: Package
Title: Ridge Estimation of Precision Matrices from High-Dimensional
Data
Version: 2.0
Maintainer: Carel F.W. Peeters <cf.peeters@vumc.nl>
Author: Carel F.W. Peeters [cre, aut], Anders Ellern Bilgrau [aut], Wessel N. van Wieringen [aut]
Description: Proper L2-penalized ML estimators for the
precision matrix as well as supporting functions to employ these estimators
in a graphical modeling setting.
Depends: R (>= 2.15.1)
Imports: igraph, stats, methods, expm, reshape, ggplot2, Hmisc,
fdrtool, snowfall, sfsmisc, utils, grDevices, graphics
LinkingTo: Rcpp, RcppArmadillo
KeepSource: yes
License: GPL (>= 2)
Suggests: KEGGgraph, graph, testthat
Packaged: 2015-10-15 13:39:00 UTC; cf.peeters
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-10-15 15:51:57

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'rags2ridges' ...
** package 'rags2ridges' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c rags2ridges.cpp -o rags2ridges.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o rags2ridges.so RcppExports.o rags2ridges.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/rags2ridges/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'rags2ridges'
    finding HTML links ... done
    GGMblockNullPenalty                     html  
    GGMblockTest                            html  
    GGMmutualInfo                           html  
    GGMnetworkStats                         html  
    GGMnetworkStats.fused                   html  
    GGMpathStats                            html  
    finding level-2 HTML links ... done

    GGMpathStats.fused                      html  
    KLdiv                                   html  
    KLdiv.fused                             html  
    NLL                                     html  
    Ugraph                                  html  
    adjacentMat                             html  
    armaRidgeP                              html  
    conditionNumberPlot                     html  
Rd warning: /tmp/RtmpnT8Ddq/R.INSTALL1fc023191f37/rags2ridges/man/conditionNumberPlot.Rd:78: missing file link 'rcond'
    covML                                   html  
    covMLknown                              html  
    createS                                 html  
    default.penalty                         html  
    default.target                          html  
    default.target.fused                    html  
    edgeHeat                                html  
    evaluateS                               html  
    evaluateSfit                            html  
    fullMontyS                              html  
    fused.test                              html  
    getKEGGPathway                          html  
    is.Xlist                                html  
    isSymmetricPD                           html  
    kegg.target                             html  
    loss                                    html  
    optPenalty.LOOCV                        html  
    optPenalty.LOOCVauto                    html  
    optPenalty.aLOOCV                       html  
    optPenalty.fused                        html  
    pcor                                    html  
    plot.ptest                              html  
    pooledS                                 html  
    print.optPenaltyFusedGrid               html  
    print.ptest                             html  
    rags2ridges-package                     html  
    ridgeP                                  html  
    ridgeP.fused                            html  
    ridgePathS                              html  
    ridgeS                                  html  
    rmvnormal                               html  
    sparsify                                html  
    sparsify.fused                          html  
    symm                                    html  
** building package indices
** testing if installed package can be loaded
* DONE (rags2ridges)
Making 'packages.html' ... done