rsbml

Package: rsbml
Version: 2.30.0
Title: R support for SBML, using libsbml
Author: Michael Lawrence <michafla@gene.com>
Depends: R (>= 2.6.0), BiocGenerics (>= 0.3.2), methods, utils
Imports: BiocGenerics, graph, utils
SystemRequirements: libsbml (==5.10.2)
Maintainer: Michael Lawrence <michafla@gene.com>
Description: Links R to libsbml for SBML parsing, validating output,
provides an S4 SBML DOM, converts SBML to R graph objects.
Optionally links to the SBML ODE Solver Library (SOSLib) for
simulating models.
License: Artistic-2.0
URL: http://www.sbml.org
biocViews: GraphAndNetwork, Pathways, Network
NeedsCompilation: yes
Packaged: 2016-05-04 03:03:36 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'rsbml' ...
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for LIBSBML3... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking sbml/xml/ParseMessage.h usability... no
checking sbml/xml/ParseMessage.h presence... no
checking for sbml/xml/ParseMessage.h... no
configure: error: Could not detect libsbml (>= 3.0) via pkg-config.
      rsbml requires libsbml from http://www.sbml.org/software/libsbml/.
      Please ensure that libsbml.pc is in PKG_CONFIG_PATH.
      Also failed to find ParseMessage.h indicating that libsbml 2.x is
      not installed. To specify the include path manually use
      --with-libsbml-include or LIBSBML_INCLUDE.
ERROR: configuration failed for package 'rsbml'
* removing '/home/ddbj/local/lib64/R/library/rsbml'