rstan

Package: rstan
Type: Package
Title: R Interface to Stan
Version: 2.10.1
Date: 2016-06-24
Authors@R: c(person("Jiqiang", "Guo", email = "guojq28@gmail.com", role = "aut"),
person("Jonah", "Gabry", email = "jsg2201@columbia.edu", role = "aut"),
person("Ben", "Goodrich", email = "benjamin.goodrich@columbia.edu", role = c("cre", "aut")),
person("Daniel", "Lee", role = "ctb"),
person("Krzysztof", "Sakrejda", role = "ctb"),
person("Trustees of", "Columbia University", role = "cph"),
person("Oleg", "Sklyar", role = "cph", comment = "R/cxxfunplus.R"),
person("The R", "Core Team", role = "cph", comment = "R/pairs.R"),
person("Jens", "Oehlschlaegel-Akiyoshi", role = "cph", comment = "R/pairs.R"),
person("Hadley", "Wickham", role = "cph", comment = "R/rtools.R"),
person("Joel", "de Guzman", role = "cph", comment = "Boost"),
person("John", "Fletcher", role = "cph", comment = "Boost"),
person("Thomas", "Heller", role = "cph", comment = "Boost"),
person("Eric", "Niebler", role = "cph", comment = "Boost"))
Description: User-facing R functions are provided to parse, compile, test,
estimate, and analyze Stan models by accessing the header-only Stan library
provided by the 'StanHeaders' package. The Stan project develops a
probabilistic programming language that implements full Bayesian statistical
inference via Markov Chain Monte Carlo, rough Bayesian inference via variational
approximation, and (optionally penalized) maximum likelihood estimation via
optimization. In all three cases, automatic differentiation is used to quickly
and accurately evaluate gradients without burdening the user with the need
to derive the partial derivatives.
License: GPL (>= 3)
NeedsCompilation: yes
Imports: methods, stats4, inline, gridExtra (>= 2.0.0), Rcpp (>=
0.12.0)
Depends: R (>= 3.0.2), ggplot2 (>= 2.0.0), StanHeaders (>= 2.10.0-2)
LinkingTo: Rcpp (>= 0.12.0), RcppEigen, BH (>= 1.58), StanHeaders (>=
2.10.0-2)
Suggests: RUnit, RcppEigen, BH (>= 1.58), parallel, KernSmooth, RCurl,
loo (>= 0.1.6), shinystan (>= 2.1.0), rstudioapi, Matrix, knitr
URL: https://groups.google.com/forum/#!forum/stan-users,
http://mc-stan.org
BugReports: https://github.com/stan-dev/rstan/issues/
VignetteBuilder: knitr
Packaged: 2016-06-24 13:22:16 UTC; goodrich
Author: Jiqiang Guo [aut],
Jonah Gabry [aut],
Ben Goodrich [cre, aut],
Daniel Lee [ctb],
Krzysztof Sakrejda [ctb],
Trustees of Columbia University [cph],
Oleg Sklyar [cph] (R/cxxfunplus.R),
The R Core Team [cph] (R/pairs.R),
Jens Oehlschlaegel-Akiyoshi [cph] (R/pairs.R),
Hadley Wickham [cph] (R/rtools.R),
Joel de Guzman [cph] (Boost),
John Fletcher [cph] (Boost),
Thomas Heller [cph] (Boost),
Eric Niebler [cph] (Boost)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Repository: CRAN
Date/Publication: 2016-06-24 19:14:10

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'rstan' ...
** package 'rstan' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/home/ddbj/local/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DFUSION_MAX_VECTOR_SIZE=12 -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include" -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/StanHeaders/include"   -fpic  -g -O2  -c chains.cpp -o chains.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/home/ddbj/local/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DFUSION_MAX_VECTOR_SIZE=12 -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include" -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/StanHeaders/include"   -fpic  -g -O2  -c init.cpp -o init.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/home/ddbj/local/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DFUSION_MAX_VECTOR_SIZE=12 -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include" -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/StanHeaders/include"   -fpic  -g -O2  -c lang__ast_def.cpp -o lang__ast_def.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/home/ddbj/local/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DFUSION_MAX_VECTOR_SIZE=12 -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include" -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/StanHeaders/include"   -fpic  -g -O2  -c lang__grammars__bare_type_grammar_inst.cpp -o lang__grammars__bare_type_grammar_inst.o
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/bare_type_grammar_def.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/bare_type_grammar_inst.cpp:1,
                 from lang__grammars__bare_type_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/bare_type_grammar_def.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/bare_type_grammar_inst.cpp:1,
                 from lang__grammars__bare_type_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/bare_type_grammar_def.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/bare_type_grammar_inst.cpp:1,
                 from lang__grammars__bare_type_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/home/ddbj/local/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DFUSION_MAX_VECTOR_SIZE=12 -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include" -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/StanHeaders/include"   -fpic  -g -O2  -c lang__grammars__expression07_grammar_inst.cpp -o lang__grammars__expression07_grammar_inst.o
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar_def.hpp:6,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar_inst.cpp:1,
                 from lang__grammars__expression07_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar_def.hpp:6,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar_inst.cpp:1,
                 from lang__grammars__expression07_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar_def.hpp:6,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar_inst.cpp:1,
                 from lang__grammars__expression07_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/home/ddbj/local/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DFUSION_MAX_VECTOR_SIZE=12 -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include" -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/StanHeaders/include"   -fpic  -g -O2  -c lang__grammars__expression_grammar_inst.cpp -o lang__grammars__expression_grammar_inst.o
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar_def.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar_inst.cpp:1,
                 from lang__grammars__expression_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar_def.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar_inst.cpp:1,
                 from lang__grammars__expression_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar_def.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar_inst.cpp:1,
                 from lang__grammars__expression_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/home/ddbj/local/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DFUSION_MAX_VECTOR_SIZE=12 -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include" -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/StanHeaders/include"   -fpic  -g -O2  -c lang__grammars__functions_grammar_inst.cpp -o lang__grammars__functions_grammar_inst.o
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/bare_type_grammar.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/functions_grammar.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/functions_grammar_def.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/functions_grammar_inst.cpp:1,
                 from lang__grammars__functions_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/bare_type_grammar.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/functions_grammar.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/functions_grammar_def.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/functions_grammar_inst.cpp:1,
                 from lang__grammars__functions_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/bare_type_grammar.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/functions_grammar.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/functions_grammar_def.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/functions_grammar_inst.cpp:1,
                 from lang__grammars__functions_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/home/ddbj/local/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DFUSION_MAX_VECTOR_SIZE=12 -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include" -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/StanHeaders/include"   -fpic  -g -O2  -c lang__grammars__indexes_grammar_inst.cpp -o lang__grammars__indexes_grammar_inst.o
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/indexes_grammar.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/indexes_grammar_def.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/indexes_grammar_inst.cpp:1,
                 from lang__grammars__indexes_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/indexes_grammar.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/indexes_grammar_def.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/indexes_grammar_inst.cpp:1,
                 from lang__grammars__indexes_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/indexes_grammar.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/indexes_grammar_def.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/indexes_grammar_inst.cpp:1,
                 from lang__grammars__indexes_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/home/ddbj/local/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DFUSION_MAX_VECTOR_SIZE=12 -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include" -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/StanHeaders/include"   -fpic  -g -O2  -c lang__grammars__program_grammar_inst.cpp -o lang__grammars__program_grammar_inst.o
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/whitespace_grammar.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/program_grammar.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/program_grammar_def.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/program_grammar_inst.cpp:1,
                 from lang__grammars__program_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/whitespace_grammar.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/program_grammar.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/program_grammar_def.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/program_grammar_inst.cpp:1,
                 from lang__grammars__program_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/whitespace_grammar.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/program_grammar.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/program_grammar_def.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/program_grammar_inst.cpp:1,
                 from lang__grammars__program_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/home/ddbj/local/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DFUSION_MAX_VECTOR_SIZE=12 -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include" -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/StanHeaders/include"   -fpic  -g -O2  -c lang__grammars__semantic_actions.cpp -o lang__grammars__semantic_actions.o
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/semantic_actions.hpp:7,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/semantic_actions_def.cpp:6,
                 from lang__grammars__semantic_actions.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/semantic_actions.hpp:7,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/semantic_actions_def.cpp:6,
                 from lang__grammars__semantic_actions.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/semantic_actions.hpp:7,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/semantic_actions_def.cpp:6,
                 from lang__grammars__semantic_actions.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/home/ddbj/local/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DFUSION_MAX_VECTOR_SIZE=12 -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include" -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/StanHeaders/include"   -fpic  -g -O2  -c lang__grammars__statement_2_grammar_inst.cpp -o lang__grammars__statement_2_grammar_inst.o
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/semantic_actions.hpp:7,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_2_grammar_def.hpp:6,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_2_grammar_inst.cpp:1,
                 from lang__grammars__statement_2_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/semantic_actions.hpp:7,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_2_grammar_def.hpp:6,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_2_grammar_inst.cpp:1,
                 from lang__grammars__statement_2_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/semantic_actions.hpp:7,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_2_grammar_def.hpp:6,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_2_grammar_inst.cpp:1,
                 from lang__grammars__statement_2_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/home/ddbj/local/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DFUSION_MAX_VECTOR_SIZE=12 -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include" -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/StanHeaders/include"   -fpic  -g -O2  -c lang__grammars__statement_grammar_inst.cpp -o lang__grammars__statement_grammar_inst.o
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_grammar_def.hpp:6,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_grammar_inst.cpp:1,
                 from lang__grammars__statement_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_grammar_def.hpp:6,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_grammar_inst.cpp:1,
                 from lang__grammars__statement_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar.hpp:4,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression_grammar.hpp:5,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_grammar_def.hpp:6,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/statement_grammar_inst.cpp:1,
                 from lang__grammars__statement_grammar_inst.cpp:18:
/home/ddbj/local/lib64/R/library/BH/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I"../inst/include" -I"../inst/include/boost_not_in_BH" -I"`"/home/ddbj/local/lib64/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DFUSION_MAX_VECTOR_SIZE=12 -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include" -I"/home/ddbj/local/lib64/R/library/BH/include" -I"/home/ddbj/local/lib64/R/library/StanHeaders/include"   -fpic  -g -O2  -c lang__grammars__term_grammar_inst.cpp -o lang__grammars__term_grammar_inst.o
In file included from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/resolve.hpp:26,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/push.hpp:24,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream_buffer.hpp:22,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/iostreams/stream.hpp:21,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi/stream.hpp:15,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/home/qi.hpp:30,
                 from /home/ddbj/local/lib64/R/library/BH/include/boost/spirit/include/qi.hpp:16,
                 from /home/ddbj/local/lib64/R/library/StanHeaders/include/src/stan/lang/grammars/expression07_grammar.hpp:4,
                 from /home/ddbj/local/lib64/