saasCNV

Package: saasCNV
Version: 0.3.4
Date: 2016-05-10
Title: Somatic Copy Number Alteration Analysis Using Sequencing and SNP
Array Data
Author: Zhongyang Zhang [aut, cre],
Ke Hao [aut],
Nancy R. Zhang [ctb]
Maintainer: Zhongyang Zhang <zhongyang.zhang@mssm.edu>
Depends: R (>= 2.10), RANN, DNAcopy
Description: Perform joint segmentation on two signal dimensions derived from
total read depth (intensity) and allele specific read depth (intensity) for
whole genome sequencing (WGS), whole exome sequencing (WES) and SNP array data.
License: GPL (>= 2)
URL: https://zhangz05.u.hpc.mssm.edu/saasCNV/
NeedsCompilation: no
Packaged: 2016-05-17 14:58:22 UTC; zhangz05
Repository: CRAN
Date/Publication: 2016-05-18 02:04:56

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'saasCNV' ...
** package 'saasCNV' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'saasCNV'
    finding HTML links ... done
    GC.adjust                               html  
    NGS.CNV                                 html  
    SNP.CNV                                 html  
    cnv.call                                html  
    cnv.data                                html  
    diagnosis.cluster.plot                  html  
    diagnosis.seg.plot.chr                  html  
    genome.wide.plot                        html  
    internals                               html  
    joint.segmentation                      html  
    merging.segments                        html  
    reannotate.CNV.res                      html  
    saasCNV-package                         html  
    snp.cnv.data                            html  
    snp.refine.boundary                     html  
    vcf2txt                                 html  
** building package indices
** testing if installed package can be loaded
* DONE (saasCNV)
Making 'packages.html' ... done