seqPattern

Package: seqPattern
Title: Visualising oligonucleotide patterns and motif occurrences
across a set of sorted sequences
Version: 1.4.0
Date: 08-05-2015
Author: Vanja Haberle <vanja.haberle@gmail.com>
Maintainer: Vanja Haberle <vanja.haberle@gmail.com>
Imports: Biostrings, GenomicRanges, IRanges, KernSmooth, plotrix
Depends: methods, R (>= 2.15.0)
Suggests: BSgenome.Drerio.UCSC.danRer7, CAGEr, RUnit, BiocGenerics,
BiocStyle
Enhances: parallel
Description: Visualising oligonucleotide patterns and sequence motifs
occurrences across a large set of sequences centred at a common
reference point and sorted by a user defined feature.
License: GPL-3
biocViews: Visualization, SequenceMatching
Collate: MotifScanningFunctions.R MotifScanningMethods.R
PatternOccurrenceFunctions.R PatternOccurrenceMethods.R
PlottingFunctions.R PlottingMethods.R
NeedsCompilation: no
Packaged: 2016-05-04 06:03:22 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'seqPattern' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'seqPattern'
    finding HTML links ... done
    TBPpwm                                  html  
    getPatternOccurrenceList                html  
    finding level-2 HTML links ... done

    motifScanHits                           html  
    motifScanScores                         html  
    plotMotifDensityMap                     html  
    plotMotifOccurrenceAverage              html  
    plotMotifScanScores                     html  
    plotPatternDensityMap                   html  
    plotPatternOccurrenceAverage            html  
    seqPattern-package                      html  
    zebrafisPromoters                       html  
    zebrafisPromoters24h                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (seqPattern)
Making 'packages.html' ... done