spliceR

Package: spliceR
Version: 1.14.0
Date: 2014/04/29
Title: Classification of alternative splicing and prediction of coding
potential from RNA-seq data.
Author: Johannes Waage <johannes.waage@gmail.com>, Kristoffer
Vitting-Seerup <k.vitting.seerup@gmail.com>
Maintainer: Johannes Waage <johannes.waage@gmail.com>, Kristoffer
Vitting-Seerup <k.vitting.seerup@gmail.com>
Imports: GenomicRanges, IRanges
Depends: R (>= 2.15.0), methods, cummeRbund, rtracklayer, VennDiagram,
RColorBrewer, plyr
Suggests: BSgenome.Hsapiens.UCSC.hg19, BSgenome
Description: An R package for classification of alternative splicing
and prediction of coding potential from RNA-seq data.
License: GPL (>=2)
biocViews: GeneExpression, Transcription, AlternativeSplicing,
DifferentialExpression, DifferentialSplicing, Sequencing,
Visualization
NeedsCompilation: yes
Packaged: 2016-05-04 05:00:59 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'spliceR' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c utils.c -o utils.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o spliceR.so utils.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/spliceR/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'spliceR'
    finding HTML links ... done
    CDSSet                                  html  
    SpliceRList                             html  
    annotatePTC.R                           html  
    conditions                              html  
    dim                                     html  
    generateGTF                             html  
    getCDS                                  html  
    preSpliceRFilter                        html  
    prepareCuff                             html  
    prepareCuffExample                      html  
    spliceR                                 html  
    spliceRPlot                             html  
    tools                                   html  
    topIsoShift                             html  
    totalNumberOfAS                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (spliceR)
Making 'packages.html' ... done