cummeRbund : Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.

Package: cummeRbund
Title: Analysis, exploration, manipulation, and visualization of
Cufflinks high-throughput sequencing data.
Version: 2.14.0
Date: 2013-04-22
Author: L. Goff, C. Trapnell, D. Kelley
Description: Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations.
Imports: methods, plyr, BiocGenerics, S4Vectors (>= 0.9.25), Biobase
Depends: R (>= 2.7.0), BiocGenerics (>= 0.3.2), RSQLite, ggplot2,
reshape2, fastcluster, rtracklayer, Gviz
Suggests: cluster, plyr, NMFN, stringr, GenomicFeatures, GenomicRanges,
rjson
Maintainer: Loyal A. Goff <lgoff@csail.mit.edu>
License: Artistic-2.0
Collate: AllGenerics.R AllClasses.R database-setup.R methods-CuffSet.R
methods-CuffData.R methods-CuffDist.R methods-CuffGeneSet.R
methods-CuffFeatureSet.R methods-CuffGene.R
methods-CuffFeature.R tools.R
LazyLoad: yes
biocViews: HighThroughputSequencing, HighThroughputSequencingData,
RNAseq, RNAseqData, GeneExpression, DifferentialExpression,
Infrastructure, DataImport, DataRepresentation, Visualization,
Bioinformatics, Clustering, MultipleComparisons, QualityControl
NeedsCompilation: no
Packaged: 2016-05-04 04:17:08 UTC; biocbuild