sprint

Package: sprint
Title: Simple Parallel R INTerface
Version: 1.0.7
Date: 2014-09-24
Author: University of Edinburgh SPRINT Team <sprint@ed.ac.uk>
Copyright: University of Edinburgh
Maintainer: Eilidh Troup <e.troup@epcc.ed.ac.uk>
Contact: University of Edinburgh SPRINT Team <sprint@ed.ac.uk>
Depends: R (>= 2.9.2), rlecuyer, ff (>= 2.1-1), randomForest
Suggests: cluster, stringdist, RUnit, Matrix, SparseM, multtest,
Biostrings, ShortRead, golubEsets, RankProd
Imports: boot, e1071
SystemRequirements: MPI(>= 2.0)
Description: SPRINT (Simple Parallel R INTerface) is a parallel
framework for R. It provides a High Performance Computing (HPC)
harness which allows R scripts to run on HPC clusters. SPRINT
contains a library of selected R functions that have been
parallelized. Functions are named after the original R function
with the added prefix 'p', i.e. the parallel version of cor()
in SPRINT is called pcor(). Call to the parallel R functions
are included directly in standard R scripts.
SPRINT contains functions for correlation (pcor), partitioning around medoids (ppam),
apply (papply), permutation testing (pmaxT), bootstrapping (pboot), random forest (prandomForest),
rank product (pRP) and hamming distance (pstringdistmatrix).
License: GPL (>= 3)
URL: http://www.r-sprint.org
Repository: CRAN
Packaged: 2014-09-29 12:12:34 UTC; eilidhtroup
Date/Publication: 2014-09-29 18:03:02
NeedsCompilation: yes
OS_type: unix

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'sprint' ...
** package 'sprint' successfully unpacked and MD5 sums checked
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for C MPI support... checking for mpicc... no
checking for hcc... no
checking for mpxlc_r... no
checking for mpxlc... no
checking for mpcc... no
checking for cmpicc... no
checking for cc... cc
checking for MPI_Init... no
checking for MPI_Init in -lmpi... no
checking for MPI_Init in -lmpich... no
configure: error: "Unable to detect MPI compiler. Please use --with-wrapper-script option"
See `config.log' for more details.
ERROR: configuration failed for package 'sprint'
* removing '/home/ddbj/local/lib64/R/library/sprint'