treeman

Package: treeman
Type: Package
Title: Phylogenetic Tree Manipulation Class and Methods
Version: 1.0
Date: 2016-04-16
Author: D.J. Bennett
Maintainer: D.J. Bennett <dominic.john.bennett@gmail.com>
Description: S4 class and methods for efficient phylogenetic tree manipulation
for simulating evolution, running phylogenetic statistics and plotting.
License: GPL-2
Depends: R (>= 3.2.4), methods
Imports: plyr
Suggests: testthat
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-04-17 15:42:13 UTC; djb208
Repository: CRAN
Date/Publication: 2016-04-17 19:50:17

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'treeman' ...
** package 'treeman' successfully unpacked and MD5 sums checked
** R
** data
** preparing package for lazy loading
Creating a generic function for 'print' from package 'base' in package 'treeman'
Creating a generic function for 'str' from package 'utils' in package 'treeman'
** help
*** installing help indices
  converting help for package 'treeman'
    finding HTML links ... done
    Node-class                              html  
    TreeMan-class                           html  
    TreeMan-method                          html  
    TreeMen-class                           html  
    addTip                                  html  
    as-TreeMen                              html  
    cTrees                                  html  
    calcDstBLD                              html  
    calcDstMtrx                             html  
    calcDstRF                               html  
    calcDstTrp                              html  
    calcFrPrp                               html  
    calcNdBlnc                              html  
    calcNdsBlnc                             html  
    calcOvrlp                               html  
    calcPhyDv                               html  
    getNdAge                                html  
    getNdKids                               html  
    getNdLng                                html  
    getNdPrid                               html  
    getNdPtid                               html  
    getNdSlt                                html  
    getNdSstr                               html  
    getNdsAge                               html  
    getNdsKids                              html  
    getNdsLng                               html  
    getNdsPrid                              html  
    getNdsPtid                              html  
    getNdsSlt                               html  
    getNdsSstr                              html  
    getOtgrp                                html  
    getPath                                 html  
    getPrnt                                 html  
    getSpnAge                               html  
    getSpnsAge                              html  
    getSubtree                              html  
    getTxnyms                               html  
    mammals                                 html  
    pinTips                                 html  
    randTree                                html  
    readTree                                html  
    rmTip                                   html  
    setAge                                  html  
    setNdID                                 html  
    setNdOther                              html  
    setNdSpn                                html  
    setNdsID                                html  
    setNdsOther                             html  
    setNdsSpn                               html  
    setPD                                   html  
    setTol                                  html  
    treeman-package                         html  
    writeTree                               html  
** building package indices
** testing if installed package can be loaded
* DONE (treeman)
Making 'packages.html' ... done