Last data update: 2014.03.03
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vegan
Package: vegan
Title: Community Ecology Package
Version: 2.4-0
Date: 2016-06-15
Author: Jari Oksanen, F. Guillaume Blanchet, Michael Friendly, Roeland Kindt,
Pierre Legendre, Dan McGlinn, Peter R. Minchin, R. B. O'Hara,
Gavin L. Simpson, Peter Solymos, M. Henry H. Stevens, Eduard Szoecs,
Helene Wagner
Maintainer: Jari Oksanen <jari.oksanen@oulu.fi>
Depends: permute (>= 0.9-0), lattice, R (>= 3.0.0)
Suggests: parallel, tcltk, knitr
Imports: MASS, cluster, mgcv
VignetteBuilder: utils, knitr
Description: Ordination methods, diversity analysis and other
functions for community and vegetation ecologists.
License: GPL-2
BugReports: https://github.com/vegandevs/vegan/issues
URL: https://cran.r-project.org, https://github.com/vegandevs/vegan
NeedsCompilation: yes
Packaged: 2016-06-15 08:01:21 UTC; jarioksa
Repository: CRAN
Date/Publication: 2016-06-15 15:38:31
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'vegan' ...
** package 'vegan' successfully unpacked and MD5 sums checked
** libs
f95 -fpic -g -O2 -c cepin.f -o cepin.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c data2hill.c -o data2hill.o
f95 -fpic -g -O2 -c decorana.f -o decorana.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c goffactor.c -o goffactor.o
f95 -fpic -g -O2 -c monoMDS.f -o monoMDS.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nestedness.c -o nestedness.o
f95 -fpic -g -O2 -c ordering.f -o ordering.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pnpoly.c -o pnpoly.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stepacross.c -o stepacross.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c vegdist.c -o vegdist.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o vegan.so cepin.o data2hill.o decorana.o goffactor.o monoMDS.o nestedness.o ordering.o pnpoly.o stepacross.o vegdist.o -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/vegan/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'vegan'
finding HTML links ... done
BCI html
CCorA html
MDSrotate html
MOStest html
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/MOStest.Rd:150: missing file link 'confint.glm'
RsquareAdj html
SSarrhenius html
add1.cca html
adipart html
adonis html
anosim html
anova.cca html
as.mlm html
beals html
betadisper html
betadiver html
bgdispersal html
bioenv html
biplot.rda html
capscale html
cascadeKM html
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/cascadeKM.Rd:36: missing file link 'clustIndex'
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/cascadeKM.Rd:65: missing file link 'clustIndex'
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/cascadeKM.Rd:179: missing file link 'clustIndex'
cca html
cca.object html
clamtest html
commsim html
contribdiv html
decorana html
decostand html
designdist html
deviance.cca html
dispindmorisita html
dispweight html
distconnected html
diversity html
dune html
dune.taxon html
eigenvals html
envfit html
eventstar html
fisherfit html
goodness.cca html
goodness.metaMDS html
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/goodness.metaMDS.Rd:12: missing file link 'Shepard'
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/goodness.metaMDS.Rd:75: missing file link 'Shepard'
humpfit html
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/humpfit.Rd:82: missing file link 'pairs.profile'
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/humpfit.Rd:83: missing file link 'confint.profile.glm'
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/humpfit.Rd:142: missing file link 'confint.glm'
indpower html
isomap html
kendall.global html
linestack html
make.cepnames html
mantel html
mantel.correlog html
metaMDS html
mite html
model.matrix.cca html
monoMDS html
mrpp html
mso html
multipart html
nestedtemp html
nobs.adonis html
nullmodel html
oecosimu html
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/oecosimu.Rd:164: missing file link 'densityplot'
ordiArrowTextXY html
ordiarrows html
ordihull html
ordilabel html
ordiplot html
ordipointlabel html
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/ordipointlabel.Rd:52: missing file link 'pointLabel'
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/ordipointlabel.Rd:76: missing file link 'pointLabel'
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/ordipointlabel.Rd:82: missing file link 'pointLabel'
ordiresids html
ordistep html
ordisurf html
orditkplot html
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/orditkplot.Rd:126: missing file link 'tkcanvas'
orditorp html
ordixyplot html
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/ordixyplot.Rd:59: missing file link 'trellis.par.set'
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/ordixyplot.Rd:61: missing file link 'panel.arrows'
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/ordixyplot.Rd:95: missing file link 'panel.splom'
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/ordixyplot.Rd:119: missing file link 'panel.splom'
pcnm html
permatfull html
permustats html
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/permustats.Rd:56: missing file link 'densityplot'
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/permustats.Rd:110: missing file link 'densityplot'
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/permustats.Rd:115: missing file link 'densityplot'
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/permustats.Rd:148: missing file link 'densityplot'
permutations html
finding level-2 HTML links ... done
permutest.betadisper html
plot.cca html
prc html
predict.cca html
procrustes html
pyrifos html
radfit html
rankindex html
rarefy html
raupcrick html
read.cep html
renyi html
reorder.hclust html
scores html
screeplot.cca html
simper html
simulate.rda html
sipoo html
spantree html
specaccum html
specpool html
stepacross html
stressplot.wcmdscale html
taxondive html
tolerance html
treedive html
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/treedive.Rd:76: missing file link 'as.hclust.phylo'
tsallis html
varechem html
varpart html
vegan-defunct html
vegan-deprecated html
vegan-internal html
vegan-package html
vegandocs html
vegdist html
vegemite html
Rd warning: /tmp/RtmpPOr7yO/R.INSTALL4e527de012ab/vegan/man/vegemite.Rd:107: missing file link 'as.hclust.phylo'
wascores html
wcmdscale html
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (vegan)
Making 'packages.html' ... done
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