Package: metacom
Type: Package
Title: Analysis of the 'Elements of Metacommunity Structure'
Version: 1.4.4
Date: 2016-4-11
Author: Tad Dallas
Depends: vegan (>= 2.2-1)
Suggests: testthat
Maintainer: Tad Dallas <tdallas@uga.edu>
Description: Functions to analyze coherence, boundary clumping, and turnover
following the pattern-based metacommunity analysis of Leibold and Mikkelson
2002. The package also includes functions to visualize ecological networks, and
to calculate modularity as a replacement to boundary clumping.
LazyLoad: yes
LazyData: yes
License: GPL-2
BugReports: https://github.com/taddallas/metacom/issues
URL: https://github.com/taddallas/metacom
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-04-13 16:12:59 UTC; drakelab
Repository: CRAN
Date/Publication: 2016-04-13 21:35:15
Package: mpmcorrelogram
Type: Package
Title: Multivariate Partial Mantel Correlogram
Version: 0.1-3
Depends: vegan
Date: 2013-03-13
Author: Marcelino de la Cruz
Maintainer: Marcelino de la Cruz <marcelino.delacruz@upm.es>
Description: Functions to compute and plot multivariate (partial)
Mantel correlograms.
License: GPL (>= 2)
LazyLoad: yes
Acknowledgements: subvention 099/RN08/02.1 of the Spanish Ministerio de
Medio Ambiente, Medio Rural y Marino.
Packaged: 2013-03-13 20:12:39 UTC; mc
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-03-13 21:28:30
Package: Demerelate
Version: 0.9
Date: 2016-05-25
Title: Functions to Calculate Relatedness on Diploid Genetic Data
Authors@R: c(person("Philipp","Kraemer",role=c("aut",
"cre"),email="Philipp.Kraemer@uni-oldenburg.de"),person("Gabriele","Gerlach",role="aut",email="Gabriele.Gerlach@uni-oldenburg.de"))
Maintainer: Philipp Kraemer <Philipp.Kraemer@uni-oldenburg.de>
Imports: grDevices, graphics, stats, utils, methods
Depends: R (>= 2.15.0), fts, sfsmisc, vegan, mlogit
Description: Functions to calculate pairwise relatedness on diploid genetic datasets. Different estimators for relatedness can be combined with information on geographical distances. Information on heterozygosity, allele- and genotype diversity as well as genetic F-statistics are provided for each population.
License: GPL (>= 2)
URL: http://www.r-project.org
Packaged: 2016-05-26 13:38:14 UTC; philipp
NeedsCompilation: no
Author: Philipp Kraemer [aut, cre],
Gabriele Gerlach [aut]
Repository: CRAN
Date/Publication: 2016-05-31 11:10:12
Package: MiSPU
Type: Package
Title: Microbiome Based Sum of Powered Score (MiSPU) Tests
Version: 1.0
Date: 2016-02-29
Author: Chong Wu, Wei Pan
Maintainer: Chong Wu <wuxx0845@umn.edu>
Description: There is an increasing interest in investigating how the compositions of microbial communities are associated with human health and disease. In this package, we present a novel global testing method called aMiSPU, that is highly adaptive and thus high powered across various scenarios, alleviating the issue with the choice of a phylogenetic distance. Our simulations and real data analysis demonstrated that aMiSPU test was often more powerful than several competing methods while correctly controlling type I error rates.
License: GPL-2
Imports: Rcpp (>= 0.12.1)
Depends: R (>= 3.2.3), vegan, ape, aSPU, cluster
Suggests: ade4
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2016-03-17 18:15:15 UTC; chong
Repository: CRAN
Date/Publication: 2016-03-18 00:08:39
Package: SYNCSA
Type: Package
Title: SYNCSA - Analysis of functional and phylogenetic patterns in
metacommunities.
Version: 1.3.2
Date: Feb 03, 2014
Author: Vanderlei Julio Debastiani
Maintainer: Vanderlei Julio Debastiani
<vanderleidebastiani@yahoo.com.br>
Depends: vegan, mice, FD
Description: Analysis of metacommunities based on functional traits and phylogeny of the community components. The functions that are offered here implement for the R environment methods that have been available in the SYNCSA application written in C++ (by Valerio Pillar, available at http://ecoqua.ecologia.ufrgs.br/ecoqua/SYNCSA.html).
License: GPL-2
Packaged: 2014-02-01 22:06:03 UTC; vanderleidebastiani
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-02-07 16:41:09
Package: dave
Type: Package
Title: Functions for "Data Analysis in Vegetation Ecology"
Version: 1.5
Date: 2014-05-16
Author: Otto Wildi
Maintainer: Otto Wildi <otto.wildi@wsl.ch>
Description: A collection of functions accompanying the book "Data Analysis in Vegetation Ecology", Second edition. 2013, Wiley-Blackwell, Chichester
License: LGPL (>= 2.0)
LazyData: true
Depends: R (>= 3.1.0), labdsv, vegan
Packaged: 2014-08-04 06:40:09 UTC; ottowildiair
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-05 07:49:55
Package: cocorresp
Type: Package
Title: Co-Correspondence Analysis Methods
Version: 0.3-0
Date: 2016-02-28
Depends: vegan (>= 2.2-0), R (>= 3.0.0)
Imports: stats, graphics, utils, grDevices
Suggests: testthat, knitr
Author: Original Matlab routines by C.J.F. ter Braak and A.P. Schaffers. R port by Gavin L. Simpson.
Function simpls based on simpls.fit (package pls) by Ron Wehrens and Bjorn-Helge Mevik.
Maintainer: Gavin L. Simpson <ucfagls@gmail.com>
Description: Fits predictive and symmetric co-correspondence analysis (CoCA) models to relate one data matrix
to another data matrix. More specifically, CoCA maximises the weighted covariance
between the weighted averaged species scores of one community and the weighted averaged species
scores of another community. CoCA attempts to find patterns that are common to both communities.
License: GPL-2
URL: https://github.com/gavinsimpson/cocorresp
BugReports: https://github.com/gavinsimpson/cocorresp/issues
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-02-28 20:51:33 UTC; gavin
Repository: CRAN
Date/Publication: 2016-02-29 01:16:09
providing 
.