R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
BioConductor
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Results 1 - 3 of 3 found.
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GeneBreak : Gene Break Detection

Package: GeneBreak
Type: Package
Version: 1.2.0
Title: Gene Break Detection
Author: Evert van den Broek, Stef van Lieshout
Maintainer: Evert van den Broek <vandenbroek.evert@gmail.com>
Imports: graphics, methods
Depends: R (>= 3.2), QDNAseq, CGHcall, CGHbase, GenomicRanges
URL: https://github.com/stefvanlieshout/GeneBreak
Description: Recurrent breakpoint gene detection on copy number
aberration profiles.
License: GPL-2
biocViews: aCGH, CopyNumberVariation, DNASeq, Genetics, Sequencing,
WholeGenome, Visualization
LazyData: FALSE
NeedsCompilation: no
Packaged: 2016-05-04 06:37:34 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: CopyNumberVariation, DNASeq, Genetics, Sequencing, Visualization, WholeGenome, aCGH
● 3 images, 22 functions, 6 datasets
● Reverse Depends: 0

focalCall : Detection of focal aberrations in DNA copy number data

Package: focalCall
Type: Package
Title: Detection of focal aberrations in DNA copy number data
Version: 1.6.0
Date: 2014-08-19
Author: Oscar Krijgsman
Maintainer: Oscar Krijgsman <oscarkrijgsman@gmail.com>
Depends: R (>= 2.10.0), CGHcall
Suggests: RUnit, BiocGenerics
URL: https://github.com/OscarKrijgsman/focalCall
Description: Detection of genomic focal aberrations in high-resolution
DNA copy number data
License: GPL-2
biocViews: Microarray,Preprocessing,Visualization,Sequencing
NeedsCompilation: no
Packaged: 2016-05-04 05:50:30 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: Microarray, Preprocessing, Sequencing, Visualization
● 2 images, 5 functions, 1 datasets
● Reverse Depends: 0

CGHnormaliter : Normalization of array CGH data with imbalanced aberrations.

Package: CGHnormaliter
Type: Package
Title: Normalization of array CGH data with imbalanced aberrations.
Version: 1.26.0
Date: 2012-06-12
Author: Bart P.P. van Houte, Thomas W. Binsl, Hannes Hettling
Maintainer: Bart P.P. van Houte <bvhoute@few.vu.nl>
Depends: CGHcall (>= 2.17.0), CGHbase (>= 1.15.0)
Imports: Biobase, CGHbase, CGHcall, methods, stats, utils
Description: Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses an iterative procedure that effectively eliminates the influence of imbalanced copy numbers. This leads to a more reliable assessment of copy number alterations (CNAs).
License: GPL (>= 3)
biocViews: Microarray, Preprocessing
NeedsCompilation: no
Packaged: 2016-05-04 03:19:32 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: Microarray, Preprocessing
● 1 images, 4 functions, 1 datasets
● Reverse Depends: 0