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Last data update: 2014.03.03

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splineTCDiffExpr : Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction

Package: splineTCDiffExpr
Type: Package
Title: Time-course differential gene expression data analysis using
spline regression models followed by gene association network
reconstruction
Version: 0.99.4
Date: 2015-09-30
Author: Agata Michna
Maintainer: Herbert Braselmann <braselm@helmholtz-muenchen.de>, Agata Michna <agata.michna@helmholtz-muenchen.de>
Depends: R (>= 3.3), Biobase, igraph, limma, GSEABase, gtools, splines,
GeneNet (>= 1.2.13), longitudinal (>= 1.1.12), FIs
Description: This package provides functions for differential gene
expression analysis of gene expression time-course data.
Natural cubic spline regression models are used. Identified
genes may further be used for pathway enrichment analysis
and/or the reconstruction of time dependent gene regulatory
association networks.
License: GPL-3
biocViews: GeneExpression, DifferentialExpression, TimeCourse,
Regression, GeneSetEnrichment, NetworkEnrichment,
NetworkInference, GraphAndNetwork
VignetteBuilder: knitr
Suggests: knitr
NeedsCompilation: no
Packaged: 2016-01-20 06:30:15 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: DifferentialExpression, GeneExpression, GeneSetEnrichment, GraphAndNetwork, NetworkEnrichment, NetworkInference, Regression, TimeCourse
● 1 images, 5 functions, 1 datasets
● Reverse Depends: 0

splineTimeR : Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction

Package: splineTimeR
Type: Package
Title: Time-course differential gene expression data analysis using
spline regression models followed by gene association network
reconstruction
Version: 1.0.1
Date: 2015-09-30
Author: Agata Michna
Maintainer: Herbert Braselmann <braselm@helmholtz-muenchen.de>, Agata Michna <agata.michna@helmholtz-muenchen.de>
Depends: R (>= 3.3), Biobase, igraph, limma, GSEABase, gtools, splines,
GeneNet (>= 1.2.13), longitudinal (>= 1.1.12), FIs
Description: This package provides functions for differential gene
expression analysis of gene expression time-course data.
Natural cubic spline regression models are used. Identified
genes may further be used for pathway enrichment analysis
and/or the reconstruction of time dependent gene regulatory
association networks.
License: GPL-3
biocViews: GeneExpression, DifferentialExpression, TimeCourse,
Regression, GeneSetEnrichment, NetworkEnrichment,
NetworkInference, GraphAndNetwork
VignetteBuilder: knitr
Suggests: knitr
NeedsCompilation: no
Packaged: 2016-05-16 05:53:15 UTC; biocbuild