Last data update: 2014.03.03

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 Results 1 - 9 of 9 found.
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dsQTL : dsQTL, data excerpt from Degner et al. 2012 Nature letter

Package: dsQTL
Title: dsQTL, data excerpt from Degner et al. 2012 Nature letter
Version: 0.10.0
Author: VJ Carey <stvjc@channing.harvard.edu>
Maintainer: VJ Carey <stvjc@channing.harvard.edu>
Description: dsQTL, excerpt from Degner et al. 2012 Nature letter
on DNA variants associated with DnaseI hypersensitivity
Depends: R (>= 2.15.0), utils, Biobase, SummarizedExperiment, GGBase
(>= 3.31.1)
Suggests: GGtools, rtracklayer
License: Artistic-2.0
LazyLoad: yes
biocViews: ExperimentData, Genome, SequencingData, DNASeqData, NCI,
Project1000genomes, BiocViews
NeedsCompilation: no
Packaged: 2016-05-07 20:25:07 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: BiocViews, DNASeqData, ExperimentData, Genome, NCI, Project1000genomes, SequencingData
● 0 images, 1 functions, 0 datasets
● Reverse Depends: 1

encoDnaseI : data provided by UCSC for Cd4 raw measures of DnaseI hypersensitivity

Package: encoDnaseI
Title: data provided by UCSC for Cd4 raw measures of DnaseI
hypersensitivity
Description: data provided by UCSC for Cd4 raw measures of DnaseI hypersensitivity
Version: 0.10.0
Author: VJ Carey <stvjc@channing.harvard.edu>
Depends: R (>= 2.15.0), methods, Biobase (>= 2.5.5), lattice, GGtools,
GGBase
Suggests: GGdata
Maintainer: VJ Carey <stvjc@channing.harvard.edu>
License: Artistic-2.0
biocViews: ExperimentData, Genome, Homo_sapiens_Data, SNPData, ENCODE
NeedsCompilation: no
Packaged: 2016-05-07 20:14:40 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: ENCODE, ExperimentData, Genome, Homo_sapiens_Data, SNPData
● 3 images, 3 functions, 0 datasets
● Reverse Depends: 0

yri1kgv : expression + genotype on 79 unrelated YRI individuals

Package: yri1kgv
Title: expression + genotype on 79 unrelated YRI individuals
Version: 0.14.0
Author: VJ Carey <stvjc@channing.harvard.edu>
Description: expression + genotype on 79 unrelated YRI individuals
Depends: GGBase
Imports: Biobase
Maintainer: VJ Carey <stvjc@channing.harvard.edu>
License: Artistic-2.0
LazyLoad: yes
biocViews: ArrayExpress
NeedsCompilation: no
Packaged: 2016-05-07 20:43:48 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: ArrayExpress
● 0 images, 1 functions, 0 datasets
● Reverse Depends: 0

GGdata : all 90 hapmap CEU samples, 47K expression, 4mm SNP

Package: GGdata
Title: all 90 hapmap CEU samples, 47K expression, 4mm SNP
Description: data exemplars dealing with hapmap SNP reports, GWAS, etc.
Version: 1.10.0
Author: VJ Carey <stvjc@channing.harvard.edu>
Maintainer: VJ Carey <stvjc@channing.harvard.edu>
biocViews: ExperimentData, HapMap, Genome, SequencingData,
MicroarrayData, SNPData
Depends: R (>= 2.12.0), methods, Biobase (>= 2.5.5), GGBase, snpStats,
illuminaHumanv1.db, AnnotationDbi
Enhances: GGtools
LazyLoad: yes
License: LGPL
NeedsCompilation: no
Packaged: 2016-05-07 20:11:26 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: ExperimentData, Genome, HapMap, MicroarrayData, SNPData, SequencingData
● 0 images, 1 functions, 0 datasets
● Reverse Depends: 0

GGtools : software and data for analyses in genetics of gene expression

Package: GGtools
Title: software and data for analyses in genetics of gene expression
Version: 5.8.0
Author: VJ Carey <stvjc@channing.harvard.edu>
Description: software and data for analyses in genetics of gene expression
and/or DNA methylation
Suggests: GGdata, illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP144.GRCh37,
multtest, aod, rmeta
Depends: R (>= 2.14), GGBase (>= 3.19.7), data.table, parallel,
Homo.sapiens
Imports: methods, utils, stats, BiocGenerics, snpStats, ff, Rsamtools,
AnnotationDbi, Biobase, bit, VariantAnnotation, hexbin,
rtracklayer, Gviz, stats4, S4Vectors (>= 0.9.25), IRanges,
GenomeInfoDb, GenomicRanges, iterators, Biostrings, ROCR,
biglm, ggplot2, reshape2
Enhances: MatrixEQTL, foreach, doParallel, gwascat
Maintainer: VJ Carey <stvjc@channing.harvard.edu>
License: Artistic-2.0
biocViews: Genetics, GeneExpression, GeneticVariability, SNP
LazyLoad: yes
Packaged: 2016-05-04 02:57:50 UTC; biocbuild
Collate: AllClasses.R AllGenerics.R eqtlTests.R managers.R topFeats.R
gwSnpTests.R snpsCisToGenes.R relocate.R topSnps.R
snplocsDefault.R transutils.R vcfutils.R eqtlEstimates.R
alleq.R meta.R eqME.R meta.all.R best.trans.eQTLs.R
meta.transScores.R summInfra.R bindmaf.R fdr.all.cis.R pifdr.R
getFDR.R cisConfig.R thinclass.R harvest.R scoredist.R binqq.R
gffprocess.R cisEqTools.R modutils.R seqinfo.R pureSensSoft.R
cisa.R scan.R basicappraise.R Eqappr.R
NeedsCompilation: no

● Data Source: BioConductor
● BiocViews: GeneExpression, GeneticVariability, Genetics, SNP
● 3 images, 38 functions, 4 datasets
● Reverse Depends: 3

ceu1kg : CEU (N=60) genotypes from 1000 genomes pilot phase I

Package: ceu1kg
Title: CEU (N=60) genotypes from 1000 genomes pilot phase I
Version: 0.10.0
Author: VJ Carey <stvjc@channing.harvard.edu>
Description: CEU genotypes from 1000 genomes "low coverage" pilot phase I
(approx 8 million SNP calls released July 2010); includes
Wellcome trust GENEVAR expression for 43 indiv
Depends: R (>= 2.12.0), GGBase (>= 3.9.0), GGtools, Biobase
Suggests: SNPlocs.Hsapiens.dbSNP.20101109
Maintainer: VJ Carey <stvjc@channing.harvard.edu>
License: Artistic-2.0
biocViews: SNPData, HapMap, Project1000genomes
NeedsCompilation: no
Packaged: 2016-05-07 20:19:01 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: HapMap, Project1000genomes, SNPData
● 0 images, 1 functions, 0 datasets
● Reverse Depends: 0

ceu1kgv : expression + genotype on 79 unrelated CEU individuals

Package: ceu1kgv
Title: expression + genotype on 79 unrelated CEU individuals
Version: 0.14.0
Author: VJ Carey <stvjc@channing.harvard.edu>
Description: expression + genotype on 79 unrelated CEU individuals
Depends: R (>= 3.0), GGBase
Imports: Biobase
Maintainer: VJ Carey <stvjc@channing.harvard.edu>
License: Artistic-2.0
LazyLoad: yes
biocViews: ArrayExpress
NeedsCompilation: no
Packaged: 2016-05-07 20:44:06 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: ArrayExpress
● 0 images, 1 functions, 0 datasets
● Reverse Depends: 0

ceuhm3 : ceuhm3: genotype (HapMap phase III) and expression data for CEPH CEU cohort

Package: ceuhm3
Title: ceuhm3: genotype (HapMap phase III) and expression data for CEPH
CEU cohort
Version: 0.10.0
Author: VJ Carey
Description: ceuhm3: genotype (HapMap phase III) and expression data for CEPH CEU cohort
Depends: R (>= 2.12.0), GGBase, Biobase
Imports: GGtools
Maintainer: VJ Carey <stvjc@channing.harvard.edu>
License: Artistic-2.0
LazyLoad: yes
biocViews: SNPData, HapMap
NeedsCompilation: no
Packaged: 2016-05-07 20:18:05 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: HapMap, SNPData
● 0 images, 1 functions, 0 datasets
● Reverse Depends: 0

hmyriB36 : YRI hapmap + expression (GENEVAR), Build 36, r23a genotypes

Package: hmyriB36
Title: YRI hapmap + expression (GENEVAR), Build 36, r23a genotypes
Description: YRI hapmap + expression (GENEVAR), Build 36, r23a genotypes
Version: 1.8.0
Author: Vincent Carey <stvjc@channing.harvard.edu>
Maintainer: Vincent Carey <stvjc@channing.harvard.edu>
Depends: R (>= 2.13.0), methods, Biobase (>= 2.5.5), GGBase
Suggests: GGtools, illuminaHumanv1.db
License: Artistic-2.0
biocViews: ExperimentData, Genome, SNPData, HapMap
NeedsCompilation: no
Packaged: 2016-05-07 20:15:41 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: ExperimentData, Genome, HapMap, SNPData
● 0 images, 1 functions, 0 datasets
● Reverse Depends: 0

Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO