metaX : An R package for metabolomic data analysis

Package: metaX
Type: Package
Title: An R package for metabolomic data analysis
Version: 1.4.2
Date: 2015-02-10
Author: Bo Wen <wenbo@genomics.cn>
Maintainer: Bo Wen <wenbo@genomics.cn>
Description: The package provides a integrated pipeline for mass spectrometry-
based metabolomic data analysis. It includes the stages peak detection, data
preprocessing, normalization, missing value imputation, univariate statistical
analysis, multivariate statistical analysis such as PCA and PLS-DA, metabolite
identification, pathway analysis, power analysis, feature selection and
modeling, data quality assessment.
Depends: R (>= 3.2.0), VennDiagram, pROC, SSPA, methods
Imports: Nozzle.R1, ggplot2, parallel, pcaMethods, reshape2, plyr,
BBmisc, mixOmics, preprocessCore, vsn, pls, impute, missForest,
doParallel, DiscriMiner, xcms, ape, scatterplot3d, pheatmap,
bootstrap, boot, caret, dplyr, stringr, RColorBrewer, DiffCorr,
RCurl, lattice, faahKO, data.table, CAMERA, igraph, tidyr,
scales
License: LGPL-2
URL: http://wenbostar.github.io/metaX/
BugReports: https://github.com/wenbostar/metaX/issues
Suggests: knitr, BiocStyle, R.utils, RUnit, BiocGenerics
VignetteBuilder: knitr
biocViews: Metabolomics, MassSpectrometry, QualityControl
RoxygenNote: 5.0.1
PackageStatus: Deprecated
NeedsCompilation: no
Packaged: 2016-05-16 05:38:16 UTC; biocbuild