Last data update: 2014.03.03

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Results 1 - 9 of 9 found.
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lassoscore : High-Dimensional Inference with the Penalized Score Test

Package: lassoscore
Title: High-Dimensional Inference with the Penalized Score Test
Description: Use the lasso regression method to perform approximate inference
in high dimensions, by penalizing the effects of nuisance parameters.
Version: 0.6
Author: Arie Voorman <arie.voorman@gmail.com>
Maintainer: Arie Voorman <arie.voorman@gmail.com>
Depends: R (>= 2.10), glasso, glmnet, Matrix
Suggests: covTest, lars
License: GPL (>= 2)
LazyData: true
Packaged: 2014-10-28 04:56:25 UTC; arie
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-28 08:10:02

● Data Source: CranContrib
● 0 images, 3 functions, 1 datasets
● Reverse Depends: 0

netgsa : Network-Based Gene Set Analysis

Package: netgsa
Type: Package
Title: Network-Based Gene Set Analysis
Version: 3.0
Date: 2016-06-15
Author: Ali Shojaie and Jing Ma
Maintainer: Jing Ma <jinma@upenn.edu>
Description: Carry out Network-based Gene Set Analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data.
Depends: corpcor, Matrix, glasso, glmnet, igraph
Suggests: MASS
License: GPL (>= 2)
LazyLoad: yes
URL: http://arxiv.org/abs/1411.7919
NeedsCompilation: no
Packaged: 2016-06-16 15:41:43 UTC; jingma
Repository: CRAN
Date/Publication: 2016-06-16 18:27:48

● Data Source: CranContrib
● 0 images, 6 functions, 5 datasets
● Reverse Depends: 0

MInt : Learn Direct Interaction Networks

Package: MInt
Type: Package
Title: Learn Direct Interaction Networks
Version: 1.0.1
Date: 2015-05-17
Author: Surojit Biswas, Meredith McDonald, Derek S. Lundberg, Jeffery L. Dangl,
Vladimir Jojic
Maintainer: Surojit Biswas <surojitbiswas@g.harvard.edu>
Description: Learns direct microbe-microbe interaction networks using a Poisson
multivariate-normal hierarchical model with an L1 penalized precision
matrix. Optimization is carried out using an iterative conditional modes
algorithm.
License: GPL-2
Depends: R (>= 3.1.2), glasso (>= 1.8), trust (>= 0.1-6), MASS (>=
7.3-35), testthat (>= 0.9.1)
Suggests: knitr
VignetteBuilder: knitr
Packaged: 2015-05-17 15:32:02 UTC; sbiswas
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-05-18 00:57:24

● Data Source: CranContrib
● 0 images, 3 functions, 0 datasets
● Reverse Depends: 0

hglasso : Learning graphical models with hubs

Package: hglasso
Type: Package
Title: Learning graphical models with hubs
Version: 1.2
Date: 2014-08-09
Author: Kean Ming Tan
Maintainer: Kean Ming Tan <keanming@uw.edu>
Depends: glasso, mvtnorm, igraph
Imports: fields
Description: Implements the hub graphical lasso and hub covariance graph proposal by Tan, KM., London, P., Mohan, K., Lee, S-I., Fazel, M., and Witten, D. (2014). Learning graphical models with hubs. To appear in Journal of Machine Learning Research. arXiv.org/pdf/1402.7349.pdf.
License: GPL (>= 2)
Packaged: 2014-08-09 22:11:27 UTC; keanmingtan
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-10 00:32:51

● Data Source: CranContrib
● 0 images, 10 functions, 0 datasets
● Reverse Depends: 0

spaceExt : Extension of SPACE

Package: spaceExt
Version: 1.0
Date: 2011-11-10
Title: Extension of SPACE
Author: Shiyuan He <flyoverearth@163.com>.
Maintainer: Shiyuan He <flyoverearth@163.com>
Depends: limSolve, glasso
Description: undirected graph inference with missing data
License: GPL (>= 2)
Repository: CRAN
Packaged: 2011-12-16 13:21:41 UTC; Wayne He
Date/Publication: 2011-12-16 18:26:25

● Data Source: CranContrib
● 0 images, 2 functions, 1 datasets
● Reverse Depends: 0

sparseBC : Sparse Biclustering of Transposable Data

Package: sparseBC
Type: Package
Title: Sparse Biclustering of Transposable Data
Version: 1.1
Date: 2015-02-09
Author: Kean Ming Tan
Maintainer: Kean Ming Tan <keanming@u.washington.edu>
Depends: glasso
Imports: fields
Description: Implements the sparse biclustering proposal of Tan and Witten (2014), Sparse biclustering of transposable data. Journal of Computational and Graphical Statistics 23(4):985-1008.
License: GPL (>= 2)
Packaged: 2015-02-15 02:12:51 UTC; keanmingtan
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2015-02-15 07:35:48

● Data Source: CranContrib
● 0 images, 8 functions, 1 datasets
● Reverse Depends: 0

Tsphere : Transposable Sphering for Large-Scale Inference with Correlated Data.

Package: Tsphere
Type: Package
Title: Transposable Sphering for Large-Scale Inference with Correlated
Data.
Version: 1.0
Date: 2011-11-12
Author: Genevera I. Allen
Maintainer: Genevera I. Allen <gallen@rice.edu>
URL: http://www.stat.rice.edu/~gallen/
Description: Adjusts for correlations among the rows and columns via
the Transposable Sphering Algorithm when conducting large-scale
inference on the rows of a data matrix.
License: GPL-2
Depends: glasso, rms
Packaged: 2012-10-29 08:57:46 UTC; ripley
Repository: CRAN
Date/Publication: 2012-10-29 08:57:46

● Data Source: CranContrib
● 0 images, 7 functions, 0 datasets
● Reverse Depends: 0

rrlda : Robust Regularized Linear Discriminant Analysis

Package: rrlda
Version: 1.1
Type: Package
Title: Robust Regularized Linear Discriminant Analysis
Date: 2011-09-18
Author: Moritz Gschwandtner, Peter Filzmoser, Christophe Croux,
Gentiane Haesbroeck
Maintainer: Moritz Gschwandtner <moritz.gschwandtner@chello.at>
Depends: pcaPP, mvoutlier, glasso, matrixcalc
Description: This package offers methods to perform robust regularized
linear discriminant analysis.
License: GPL (>= 3)
Packaged: 2012-06-09 16:19:42 UTC; Moritz
Repository: CRAN
Date/Publication: 2012-06-09 16:50:10

● Data Source: CranContrib
● 0 images, 3 functions, 0 datasets
● Reverse Depends: 0

rsggm : Robust Sparse Gaussian Graphical Modeling via the Gamma-Divergence

Package: rsggm
Type: Package
Title: Robust Sparse Gaussian Graphical Modeling via the
Gamma-Divergence
Version: 0.3
Date: 2015-08-21
Author: Kei Hirose
Maintainer: Kei Hirose <mail@keihirose.com>
Depends: MASS, Matrix, glasso, QUIC
Imports: methods
Description: Robust estimation of sparse inverse covariance matrix via the gamma-divergence.
License: GPL (>= 2)
URL: http://www.keihirose.com
NeedsCompilation: no
Packaged: 2015-08-21 09:54:25 UTC; hirosekei
Repository: CRAN
Date/Publication: 2015-08-21 15:53:12

● Data Source: CranContrib
● 0 images, 2 functions, 0 datasets
● Reverse Depends: 0