rgsepd : Gene Set Enrichment / Projection Displays

Package: rgsepd
Type: Package
Title: Gene Set Enrichment / Projection Displays
Version: 1.4.2
Date: 2016-04-02
Author: Karl Stamm
Maintainer: Karl Stamm <karl.stamm@gmail.com>
Description: R/GSEPD is a bioinformatics package for R to help
disambiguate transcriptome samples (a matrix of RNA-Seq counts
at RefSeq IDs) by automating differential expression (with
DESeq2), then gene set enrichment (with GOSeq), and finally a
N-dimensional projection to quantify in which ways each sample
is like either treatment group.
Depends: R (>= 3.3.0), DESeq2, goseq (>= 1.17)
Imports: gplots, biomaRt, org.Hs.eg.db, GO.db, SummarizedExperiment,
hash, AnnotationDbi
Suggests: boot, tools, RUnit, BiocGenerics, knitr, xtable
License: GPL-3
biocViews: Software, DifferentialExpression, GeneSetEnrichment, RNASeq
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-05-16 05:08:53 UTC; biocbuild