Package: phenoDist
Version: 1.20.0
Title: Phenotypic distance measures
Author: Xian Zhang, Gregoire Pau, Wolfgang Huber, Michael Boutros
Maintainer: Xian Zhang <xianzhang@gmail.com>
Depends: R (>= 2.9.0), imageHTS, e1071
Suggests: GOstats, MASS
Description: PhenoDist is designed for measuring phenotypic distance in
image-based high-throughput screening, in order to identify
strong phenotypes and to group treatments into functional
clusters.
Reference:
License: LGPL-2.1
URL: http://www.dkfz.de/signaling
http://www.embl.de/research/units/genome_biology/huber/
biocViews: CellBasedAssays
NeedsCompilation: no
Packaged: 2016-05-04 03:52:46 UTC; biocbuild
Package: PGPC
Type: Package
Title: Experimental data and analysis of the chemical-genetic
interaction screen in isogenic HCT116 cell lines
Version: 1.0.2
Author: Felix Klein
Maintainer: Felix Klein <felix.klein@embl.de>
Description: This package contains the experimental data and a vignette
guiding through the analysis of a chemical-genenetic
interaction screen in isogenic HCT116 cell lines. The code can
be executed to generate all results and figures for the
manuscript "A chemical-genetic interaction map of small molecules using
high-throughput imaging in cancer cells" accepted for publicaton at
Molecular Systems Biology. Data availability: Complementary views on
this dataset are available through different repositories. The image
data files are available from the BioStudies database at the European
Bioinformatics Institute (EMBL-EBI) under the accession S-BSMS-PGPC1
(http://wwwdev.ebi.ac.uk/biostudies/studies/S-BSMS-PGPC1)
An interactive front-end for exploration of the images is provided by
the IDR database http://dx.doi.org/10.17867/10000101.
The authors are hosting an interactive webpage to browse images and
interaction profiles at http://dedomena.embl.de/PGPC.
License: Artistic-2.0
LazyLoad: true
Depends: R (>= 3.0), EBImage, imageHTS, SearchTrees, limma, RColorBrewer, gplots, splots, ggplot2, geneplotter, ChemmineR, reshape2, plyr
VignetteBuilder: knitr
Suggests: BiocStyle, knitr
biocViews: CancerData, ColonCancerData, ExperimentData
NeedsCompilation: no
Packaged: 2016-05-28 15:50:08 UTC; biocbuild
providing 
.