Package: StAMPP
Type: Package
Title: Statistical Analysis of Mixed Ploidy Populations
Depends: R (>= 2.14.0), pegas
Imports: parallel, doParallel, foreach, adegenet, methods, utils
Version: 1.4
Date: 2015-06-30
Author: LW Pembleton
Maintainer: LW Pembleton <luke.pembleton@ecodev.vic.gov.au>
Description: Allows users to calculate pairwise Nei's Genetic Distances (Nei 1972), pairwise Fixation
Indexes (Fst) (Weir & Cockerham 1984) and also Genomic Relationship matrixes following Yang et al. (2010) in mixed and single
ploidy populations. Bootstrapping across loci is implemented during Fst calculation to generate confidence intervals and p-values
around pairwise Fst values. StAMPP utilises SNP genotype data of any ploidy level (with the ability to handle missing data) and is coded to
utilise multithreading where available to allow efficient analysis of large datasets. StAMPP is able to handle genotype data from genlight objects
allowing integration with other packages such adegenet.
Please refer to LW Pembleton, NOI Cogan & JW Forster, 2013, Molecular Ecology Resources, 13(5), 946-952. doi:10.1111/1755-0998.12129 for the appropriate citation and user manual. Thank you in advance.
License: GPL-3
NeedsCompilation: no
Packaged: 2015-07-06 00:32:55 UTC; lp40
Repository: CRAN
Date/Publication: 2015-07-06 06:31:23
Package: spider
Type: Package
Title: Species Identity and Evolution in R
Version: 1.3-0
Date: 2013-12-25
Author: Samuel Brown, Rupert Collins, Stephane Boyer, Marie-Caroline Lefort, Jagoba Malumbres-Olarte, Cor Vink, Rob Cruickshank
Maintainer: Samuel Brown <s_d_j_brown@hotmail.com>
Description: A package for the analysis of species limits and DNA barcoding data
License: GPL
LazyLoad: yes
Depends: ape, pegas
Packaged: 2013-12-27 04:41:31 UTC; sam
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-12-27 07:30:41
providing 
.