R Graphical Manual

Last data update: 2014.03.03

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CranContrib
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Results 1 - 4 of 4 found.
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mvMORPH : Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data

Package: mvMORPH
Type: Package
Title: Multivariate Comparative Tools for Fitting Evolutionary Models
to Morphometric Data
Version: 1.0.7
Date: 2016-05-25
Author: Julien Clavel, with contributions from Aaron King, and Emmanuel Paradis
Maintainer: Julien Clavel <julien.clavel@hotmail.fr>
Description: Fits multivariate (Brownian Motion, Early Burst, ACDC, Ornstein-Uhlenbeck and Shifts) models of continuous traits evolution on trees and time series.
Depends: R (>= 2.9.1), phytools, ape, corpcor, subplex
Imports: stats, spam
Suggests: knitr, car
License: GPL (>= 2.0)
URL: https://github.com/JClavel/mvMORPH
VignetteBuilder: knitr
NeedsCompilation: yes
Repository: CRAN
Packaged: 2016-06-17 23:25:59 UTC; julienclavel
Date/Publication: 2016-06-18 10:06:57

● Data Source: CranContrib
● Cran Task View: Phylogenetics
● 0 images, 15 functions, 0 datasets
● Reverse Depends: 0

MonoPhy : Allows to Explore Monophyly (or Lack of it) of Taxonomic Groups in a Phylogeny

Package: MonoPhy
Type: Package
Title: Allows to Explore Monophyly (or Lack of it) of Taxonomic Groups
in a Phylogeny
Version: 1.1
Date: 2016-03-08
Author: Orlando Schwery
Maintainer: Orlando Schwery <oschwery@vols.utk.edu>
Depends: ape, phytools, phangorn, RColorBrewer, taxize
Description: Requires rooted resolved phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways.
License: GPL-3
Suggests: knitr, testthat, spacodiR, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-03-10 23:45:11 UTC; orlandoschwery
Repository: CRAN
Date/Publication: 2016-03-11 10:27:40

● Data Source: CranContrib
● 2 images, 6 functions, 1 datasets
● Reverse Depends: 0

convevol : Quantifies and assesses the significance of convergent evolution

Package: convevol
Title: Quantifies and assesses the significance of convergent evolution
Version: 1.0
Authors@R: "C. Tristan Stayton <tstayton@bucknell.edu> [aut, cre]"
Description: Quantifies and assesses the significance of convergent evolution.
Depends: R (>= 3.1.2), ape, geiger, MASS, phytools
Imports: cluster
License: GPL-2
LazyData: true
Packaged: 2014-12-21 20:18:58 UTC; tstayton
Author: "C. Tristan Stayton" [aut, cre]
Maintainer: "C. Tristan Stayton" <tstayton@bucknell.edu>
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-22 05:00:28

● Data Source: CranContrib
● 0 images, 11 functions, 0 datasets
● Reverse Depends: 0

bayou : Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies

Package: bayou
Type: Package
Title: Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies
Version: 1.1.0
Date: 2015-10-16
Author: Josef C. Uyeda, Jon Eastman and Luke Harmon
Maintainer: Josef C. Uyeda <josef.uyeda@gmail.com>
Description: Tools for fitting and simulating multi-optima Ornstein-Uhlenbeck
models to phylogenetic comparative data using Bayesian reversible-jump
methods.
License: GPL (>= 2)
Depends: ape (>= 3.0-6), geiger (>= 2.0), R (>= 2.15.0), phytools, coda
Imports: Rcpp (>= 0.10.3), MASS, mnormt, fitdistrplus, denstrip,
foreach, stats, grDevices, graphics
Suggests: doParallel
LinkingTo: Rcpp, RcppArmadillo
Collate: 'RcppExports.R' 'bayou-utilities.R' 'probability.R'
'bayou-weight_matrix.R' 'bayou-moves.R' 'bayou-likelihood.R'
'bayou-prior.R' 'conversion-utilities.R'
'bayou-mcmc-utilities.R' 'bayou-mcmc.R' 'bayou-plotting.R'
'bayou-simulation.r' 'bayou-steppingstone.R' 'bayou-package.R'
NeedsCompilation: yes
Packaged: 2015-10-17 14:40:06 UTC; josef
Repository: CRAN
Date/Publication: 2015-10-25 08:55:52

● Data Source: CranContrib
● 0 images, 44 functions, 0 datasets
● Reverse Depends: 0