R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 2 of 2 found.
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GENE.E : Interact with GENE-E from R

Package: GENE.E
Type: Package
Title: Interact with GENE-E from R
Version: 1.12.2
Date: 2013-03-01
Author: Joshua Gould
Maintainer: Joshua Gould <jgould@broadinstitute.org>
Depends: R (>= 2.7.0), rhdf5 (>= 2.8.0), RCurl (>= 1.6-6)
Imports: rhdf5, RCurl
Suggests: RUnit, BiocGenerics, knitr, golubEsets (>= 1.0)
SystemRequirements: GENE-E software.
Description: Interactive exploration of matrices in GENE-E.
License: GPL-2
URL: http://www.broadinstitute.org/cancer/software/GENE-E
VignetteBuilder: knitr
biocViews: ThirdPartyClient
NeedsCompilation: no
Packaged: 2016-05-16 03:52:05 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: ThirdPartyClient
● 0 images, 2 functions, 0 datasets
● Reverse Depends: 0

GSCA : GSCA: Gene Set Context Analysis

Package: GSCA
Type: Package
Title: GSCA: Gene Set Context Analysis
Version: 2.2.0
Date: 2015-12-8
Author: Zhicheng Ji, Hongkai Ji
Maintainer: Zhicheng Ji <zji4@jhu.edu>
Description: GSCA takes as input several lists of activated and
repressed genes. GSCA then searches through a compendium of
publicly available gene expression profiles for biological
contexts that are enriched with a specified pattern of gene
expression. GSCA provides both traditional R functions and
interactive, user-friendly user interface.
License: GPL(>=2)
LazyLoad: yes
Imports: graphics
Depends: shiny, sp, gplots, ggplot2, reshape2, RColorBrewer, rhdf5,
R (>= 2.10.0)
Suggests: Affyhgu133aExpr, Affymoe4302Expr, Affyhgu133A2Expr,
Affyhgu133Plus2Expr
biocViews: GeneExpression, Visualization, GUI
NeedsCompilation: no
Packaged: 2016-05-04 05:19:05 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: GUI, GeneExpression, Visualization
● 10 images, 8 functions, 3 datasets
● Reverse Depends: 0