R Graphical Manual

Last data update: 2014.03.03

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rGADEM : de novo motif discovery

Package: rGADEM
Type: Package
Title: de novo motif discovery
Version: 2.20.0
Date: 2014-04-01
Author: Arnaud Droit, Raphael Gottardo, Gordon Robertson and Leiping Li
Maintainer: Arnaud Droit <arnaud.droit@crchuq.ulaval.ca>
Depends: R (>= 2.11.0), Biostrings, IRanges, BSgenome, methods, seqLogo
Imports: Biostrings, IRanges, methods, graphics, seqLogo
Suggests: BSgenome.Hsapiens.UCSC.hg19
Description: rGADEM is an efficient de novo motif discovery tool for
large-scale genomic sequence data. It is an open-source R
package, which is based on the GADEM software.
License: Artistic-2.0
biocViews: Microarray, ChIPchip, Sequencing, ChIPSeq, MotifDiscovery
NeedsCompilation: yes
Packaged: 2016-05-04 03:26:38 UTC; biocbuild

● Data Source: BioConductor
● BiocViews: ChIPSeq, ChIPchip, Microarray, MotifDiscovery, Sequencing
● 0 images, 6 functions, 0 datasets
● Reverse Depends: 0

motifRG : A package for discriminative motif discovery, designed for high throughput sequencing dataset

Package: motifRG
Title: A package for discriminative motif discovery, designed for high
throughput sequencing dataset
Version: 1.16.0
Date: 2012-03-23
Author: Zizhen Yao
Description: Tools for discriminative motif discovery using regression methods
Imports:
Biostrings,IRanges,seqLogo,parallel,methods,grid,graphics,XVector
Maintainer: Zizhen Yao <yzizhen@fhcrc.org>
License: Artistic-2.0
LazyLoad: yes
biocViews: Transcription,MotifDiscovery
Packaged: 2016-05-04 04:36:10 UTC; biocbuild
Depends: R (>= 2.15), Biostrings (>= 2.26), IRanges, seqLogo, parallel,
methods, grid, graphics, BSgenome, XVector,
BSgenome.Hsapiens.UCSC.hg19
NeedsCompilation: no

● Data Source: BioConductor
● BiocViews: MotifDiscovery, Transcription
● 7 images, 10 functions, 3 datasets
● Reverse Depends: 0